SimpleSearch - Line and FST details
Line specific information
| Line ID | 343H07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432923) |
| Segregation Analysis | 70:69:64 |
| Confirmed for Hit | At1g55750 |
| Parent of DUPLO pair | 12849 |
| Parent of pair(s) | none |
Gene hit At1g55750
| Sequence (A. th genome BLAST matches underlined) | >56-K016155-022-343-H07-8409 ATATCTCATTCTCAATTAATTACATAACTATTCAAAATTATCACCAACTCTATGGGATCC TCCCTATAGTGAGAGCGAATTAATACCAAACGTTTCACTTTTAATTTGAAGTCTTCTTGT ATTAATTTTTGCTATGATTGAGTTCTGAAAAACTGATACTATGTAATTTGGTAATTCGTT TTTAGATTGAACATTACCAAGTTGGATACACTTGAATACAAAAAATAACAATATAGTACC AACATTTATGACAAACTTGTTCTACATGATAGCATTTAAAAGGATTAAAGGAGTGTCTCT TATTTTTCTACAACCATCCGATCCAATTTTTATTTATTTGATTTGGAATAAACGGACTTT TATTGAAAGATCAAAATCTCCCATTTTCATCTATGGGATCCTACCCTATAGTGAGAAAAC TGAACATTTTGTGGTTCAACAATATCCGTGGCGCCATCACGCTGGATCCCGAGGTCCTGA GGAATGGGAAAGTTATATTAACGACGATAAAGCGGATTGAAAATAACGTCTCAACCGCAT ACAAAGAGCCCATGTCAATGTTAAGATTAATATTTTCTATGGGAT |
| GenBank Accession | AL952506 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:20841909 - go to primer design |
| BLAST e Value | 2e-49 |
| Hit Clone Code (BAC ID) | F20N2 |
| Hit Gene Code | At1g55750 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MTG10
| Sequence (A. th genome BLAST matches underlined) | >56-K104615-0022-343-H07-8409 AGCATTTACAATTAAATATGCAGTCAAAAATATCTCATTCTCAATTAATTACATAACTAT TCAAAATTATCACCAACTCTATGGGATCCTCCCTATAGTGAGACGTATTACTCCTCGCCC TATGGGGACCTCGTGATTCAGAGGCCTAGGAGAGGTACTGTGGGATCCTCCCTATAGGGA GACGGATTACTCGGAGCCCGGGGGTTCGTGGGTAGCGGGAAGGATACGACGCTGGATACC CTTGGGTTCTA |
| GenBank Accession | FR808393 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:24959731 - go to primer design |
| BLAST e Value | 2e-25 |
| Hit Clone Code (BAC ID) | MTG10 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR808394 [GenBank] |
Gene hit At4g03965
| Sequence (A. th genome BLAST matches underlined) | >56-K016155-022-343-H07-8409 ATATCTCATTCTCAATTAATTACATAACTATTCAAAATTATCACCAACTCTATGGGATCC TCCCTATAGTGAGAGCGAATTAATACCAAACGTTTCACTTTTAATTTGAAGTCTTCTTGT ATTAATTTTTGCTATGATTGAGTTCTGAAAAACTGATACTATGTAATTTGGTAATTCGTT TTTAGATTGAACATTACCAAGTTGGATACACTTGAATACAAAAAATAACAATATAGTACC AACATTTATGACAAACTTGTTCTACATGATAGCATTTAAAAGGATTAAAGGAGTGTCTCT TATTTTTCTACAACCATCCGATCCAATTTTTATTTATTTGATTTGGAATAAACGGACTTT TATTGAAAGATCAAAATCTCCCATTTTCATCTATGGGATCCTACCCTATAGTGAGAAAAC TGAACATTTTGTGGTTCAACAATATCCGTGGCGCCATCACGCTGGATCCCGAGGTCCTGA GGAATGGGAAAGTTATATTAACGACGATAAAGCGGATTGAAAATAACGTCTCAACCGCAT ACAAAGAGCCCATGTCAATGTTAAGATTAATATTTTCTATGGGAT |
| GenBank Accession | AL952506 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:1889441 - go to primer design |
| BLAST e Value | 1e-179 |
| Hit Clone Code (BAC ID) | T24M8 |
| Hit Gene Code | At4g03965 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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