SimpleSearch - Line and FST details
Line specific information
| Line ID | 344H04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N433016) |
| Segregation Analysis | 50:47:44 |
| Confirmed for Hit | At4g01700 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 8046, 8146 |
Gene hit At4g01700
| Sequence (A. th genome BLAST matches underlined) | >32-K016238-022-344-H04-8409 ATTTCTCATATTGACCATCATTGCTGACTACGTCCGCACCCACGCGCCTGGAGATCTGCG AAGCGCAATCACCATCTCGGAAACCCTCGCGAAATTTCTCAGTCGCGACGCCAGAGACCG AGGGTCTAGATCATGCCTATGGGATCTCTCCTATAGTGAGATCCCACTCTGGCTTGGACT TCCCCCGCAAAGCAGAGCCTATGGGATCCTCCCTATAGTGAGAGTTATACATTTACTTGT AAGCGTACCGTGACATGAAGTTGATGACCTCAATCGCGGGTTCATATGCGCCTTCTACAC ACCGGCCTAAGGCTACACCAGCGACGTAATTGCCACCCAAAAATAGCCCTTCGTAGCCCG AAGACTGTTAGATATGATTTACCCGTGTCAAGGATATCAAAGTGACCAACTATGGGATCC TCCCTATAGTGAG |
| GenBank Accession | AL952627 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:732492 - go to primer design |
| BLAST e Value | 6e-86 |
| Hit Clone Code (BAC ID) | T15B16 |
| Hit Gene Code | At4g01700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Chitinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g44630
| Sequence (A. th genome BLAST matches underlined) | >32-K016232-022-344-H04-8409 GACTTTCCAGAAGCTCTTTCACTTTGGTTGTTGATTCGCCGTTAAAAAGCAGGCTATATA AAGAAATAGATATTTATCTTCGTCACATAAGGCATCGTAACTGAACTGTATAATGCCCCC GATTTTTCCGTCGAGGCTATGGGATCCTCCCTATAGTGAGACNNNNNANANACTNNTNTN TNNNNNTTTTTTTGATAANTAGAGTTTTACCTCTTCTTTTATCATTATGGTCCGTCCGGG TTTGGGACCATTTTTGGTAGAGGTGTCAGCGAAGGCGGCCTTTCCTTTGGCCTCATGTTG ATCTTAGTGATAGCCTTCGTACTATTCAGCTATCTTTTCTACTATGTGCATATAAATGGA CAGTGAATTCCGAAGAGGATTCCGGAGATTACTCTTTGTATTACACTCTCGATTGCAGTT TGAGTTGCTGATAGTGTATCTGAGACTGTATCGGAGATAACAAGCGAGTCGAGATCCATG TTGTGGACCACCATGTTGTTCATGATATTCAGTTTGACGATAATCCGTATGAGATTCTCG ATAATCTGTTCGCCAATCTCTGCTGCGAGCTCTATTAGGACCTCTAACTGAATGTTTAAT TCGGTGCCTCTTGGGGATCCTCT |
| GenBank Accession | AL952626 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:16198114 - go to primer design |
| BLAST e Value | 7e-64 |
| Hit Clone Code (BAC ID) | T18B22 |
| Hit Gene Code | At3g44630 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Disease resistance protein (TIR-NBS-LRR class) family |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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