SimpleSearch - Line and FST details
Line specific information
| Line ID | 345C06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N433054) |
| Segregation Analysis | 50:50:46 |
| Confirmed for Hit | At2g31210 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 93479 |
Gene hit At2g31210
| Sequence (A. th genome BLAST matches underlined) | >43-K016233-022-345-C06-8409 TGTCCTGAAATTTCCCGGACTGAAGCATTTACATTGAATATATCCTGTTGACATCTTCAA GTGACATCTTCGCTCACGTTCTGTAGTAAAAGGTTTGTTCTTTCGCTTCCCTCTTCCTTT ACGCCTAATCTCTTTGCTAAACTCGATGATTCCGCTATCAAACTGAGCATTGTTATTTTC ATCTCCAACATTAGACTCATCTCTTTGAGTAGTAGTATTGGTATCAATACCAAGCAAGTA CCCTGAGTAGTCATTAGAAGGGATCAATGGAGGTTGTGGAGGAAGGTTTAAGTGAAAGAG CGGGTCATACGTGAAGCAAGAACCCGCCATTATATCAGAGCTTGGTAATGACATAGAGCA TCTATGGG |
| GenBank Accession | AL952676 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:13297334 - go to primer design |
| BLAST e Value | 3e-174 |
| Hit Clone Code (BAC ID) | F16D14 |
| Hit Gene Code | At2g31210 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g59740
| Sequence (A. th genome BLAST matches underlined) | >43-K016239-022-345-C06-8409 TGATCTGAAATTTCCCGGAATGAAGCCTTTACATTGAATATATCCTGTGGTCATCTTCTT GCGACAGCTTCGCTCACGTTGGGACTGGTAAAGCGTGTCCTTTCGCTACCCTCCTTCTCT ACGACCATTCTCCTTGCTAGACTCGATGACTCCGCTACTACACTGAGCATTGCTATTTAC ATCTCCGCCATCCAACTCATCTCTTTGACCACAACCATTGGGATCAATACCCAGCGAGTG CCCTGCATTATTCATTATAAGGGATATTCGGAGGATGTCGCAAGAGGGCTGAAGGAAAGA GCGGGTCATATGTGACTAATAAGCCGTGGTTAGATCATAACTTGTTGATGACATTCATCT GCTATGGAACACATCCTATGGAGTGTAGAATGTTTTTGGTTATATGTCACTGATTTGGNC AATTCGCGCCATTTTGTTTTGACGCCATTGCTCTTGAAAGTTCGGTTTCTTAAACAAATC CAACAAGAAAACTTTGAAAGCAGAAAATACAAAACATATTATATGTTGAGTCCTAAAAAT TTAAGATATAAGAACTTGGGGATGAAACGGAAGGCTTTACTGGATTCAAGATAAAGAAAC CCTAATGTAGTGATTCATCAAATAGACGATACAAAAGCTTGAATGTAACTGTTCATTCAA ACTAACTTTCTTAACGGTTTCAGCGTCCATGGGACAAGAAAGAATTTGTTAATGTCATTG TACCCACTGAATACAGATTAAGACCAAGTAGTACTTCGATTGATGTTTCAGGCATTCCTC TNCAAGTCTCAGCTCTTACGACATCAAGAANGATATCTGGGAGCTGCGAAACGCCCATTC AGATCTGCATAACC |
| GenBank Accession | AL952677 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:22069236 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F24G16 |
| Hit Gene Code | At3g59740 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Concanavalin A-like lectin protein kinase family protein |
| Insertion Classification | 5' region |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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