SimpleSearch - Line and FST details


Line specific information

 
Line ID 345E07
Vector Used pAC161
Line Availability available as T3 set from NASC (N433079)
Segregation Analysis 100:99:79
Confirmed for Hit At2g27670 At5g07790
Parent of DUPLO pair none
Parent of pair(s) 91857, 91860, 91861, 91862

Gene hit At2g27670

 
Sequence (A. th genome BLAST matches underlined) 
>53-K016239-022-345-E07-8409
TGTCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATTTTCCGGGTCTGAATT
TTTGTGCATGTCGATAACAAATTGTCTAAGATCTTCGAGCAAATTCTTTATTGTTTTGAT
GGTGATCTCACGGATGAACCAAGAAATCGGTGGCACATTAAGAAGAGAACAAGGCTGAAA
GATCTGCTCCATTGTCACCTTTGATCCAATCCTTCCTTTTCCGTCACTACATTTTTTGTA
CTCTTCTTCATTAATCCGCGACCTATGGGATCCTCCCCCTATAGTGAGAAGNNTAACNAA
TATGAAAACGTTATTGTATATCATCGGATTCTTATGAGTAAACGCAAACAACTATGGGAT
CCTCCCTATAGTGAG
GenBank Accession AL952713 [GenBank]
Graphic View Graphic view of gene At2g27670
Predicted Position of Insertion Chr2:11801571 - go to primer design
BLAST e Value 4e-121
Hit Clone Code (BAC ID) F15K20
Hit Gene Code At2g27670 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein (Domain of unknown function DUF220)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g07790

 
Sequence (A. th genome BLAST matches underlined) 
>53-K016233-022-345-E07-8409
ATGAAGCATTTACTGGGAATTGGATATCTCTTGTTGCAGAGGGAAATTATCAACAAGTAT
CTGCAGCTGAGGCTATAGTTGATATTTCTATGGGATCTGCCGTATAGTGAGAGGCATGTG
ACTCTTCCTGTACCATTTTTTTTCTATGGCAAGGAGACATTTCCTCCTCGTTTGCTAACG
ACACCACATTAGACCCATTGCAGCTGACAGAAAGTAAGCCATGGGATCCTCCCTACAGAG
AGACAGATGAGTCGTCGGAACCTGTCGGATCCTCCCTATAGTGAGACGGCATATGATATC
ATCCCAACTCTTATGACTAAGCGCATACAGCTATGGGATCCTCCCTATAGACAGATGACA
CAGGGAAATCCTCTGCCATGAGTGGAAACGTTACGCACTTTCTTT
GenBank Accession AL952712 [GenBank]
Graphic View Graphic view of gene At5g07790
Predicted Position of Insertion Chr5:2485518 - go to primer design
BLAST e Value 5e-31
Hit Clone Code (BAC ID) MBK20
Hit Gene Code At5g07790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37