SimpleSearch - Line and FST details
Line specific information
| Line ID | 346A05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N433125) |
| Segregation Analysis | 50:38:32 |
| Confirmed for Hit | At1g01470 |
| Parent of DUPLO pair | 964 |
| Parent of pair(s) | 95201, 95204, 95205, 95206 |
Gene hit At1g01470
| Sequence (A. th genome BLAST matches underlined) | >33-K016240-022-346-A05-8409 TATCCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGTTGTAGGGGAAT TTACTATCCCTATCCCTATGGAATTCCTCCCAATATAGATGATCCAGAGGAAGCTTTGAG GATCATTGAGATTGAGCTCGGCTTTCTCTATGATGCTCTATTCACCAAGATCGCGATTCT TCATACCGGTATTGGAACTGTCTCACGGGTCTTTGCTTCTGGTACCCTTGTGGCTGCATT CATCATTTTTCATAAGAAACCTAACAAAGGCACAGATTTTCATGGAGCTGATGTCGTAGT TACTTATACGCTGTTTGCAGTTGGCCTATGGGATCCTCCCTTATAGTGAGANANAANNNN CNNCCAACNACCCTTTTTATATCTTTCAATATGGAATCCTCCCTACTACCCAGATATAAC ACNNNNNNTNNNNANTCTCANTTGCCCTTTGCTCTTCTGAAACTGTATCTTTGATATTTT TGGAGTATACAAGCGTGTCGTGCTCCACCATGTTGACGAAGATTTTCTTCTTGTCATTGA GACGTAAGAGACTCTGGATGAACTGTTCGCCAGGCTTTACGGCGAGTTCTGTTAGGCACT CTATATGAATCTTTGACCCCCTGGGAATTGGGGATCCTCTTATATGGAATAAGAGAAATG AAGTGGCATTAAAAGCAGGAATGGCAATAACTGGCAAGTG |
| GenBank Accession | AL952787 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:172373 - go to primer design |
| BLAST e Value | 2e-08 |
| Hit Clone Code (BAC ID) | F22L4 |
| Hit Gene Code | At1g01470 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Late embryogenesis abundant protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g45470
| Sequence (A. th genome BLAST matches underlined) | >33-K016240-022-346-A05-8409 TATCCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGTTGTAGGGGAAT TTACTATCCCTATCCCTATGGAATTCCTCCCAATATAGATGATCCAGAGGAAGCTTTGAG GATCATTGAGATTGAGCTCGGCTTTCTCTATGATGCTCTATTCACCAAGATCGCGATTCT TCATACCGGTATTGGAACTGTCTCACGGGTCTTTGCTTCTGGTACCCTTGTGGCTGCATT CATCATTTTTCATAAGAAACCTAACAAAGGCACAGATTTTCATGGAGCTGATGTCGTAGT TACTTATACGCTGTTTGCAGTTGGCCTATGGGATCCTCCCTTATAGTGAGANANAANNNN CNNCCAACNACCCTTTTTATATCTTTCAATATGGAATCCTCCCTACTACCCAGATATAAC ACNNNNNNTNNNNANTCTCANTTGCCCTTTGCTCTTCTGAAACTGTATCTTTGATATTTT TGGAGTATACAAGCGTGTCGTGCTCCACCATGTTGACGAAGATTTTCTTCTTGTCATTGA GACGTAAGAGACTCTGGATGAACTGTTCGCCAGGCTTTACGGCGAGTTCTGTTAGGCACT CTATATGAATCTTTGACCCCCTGGGAATTGGGGATCCTCTTATATGGAATAAGAGAAATG AAGTGGCATTAAAAGCAGGAATGGCAATAACTGGCAAGTG |
| GenBank Accession | AL952787 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:18423978 - go to primer design |
| BLAST e Value | 4e-127 |
| Hit Clone Code (BAC ID) | MFC19 |
| Hit Gene Code | At5g45470 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein, putative (DUF594) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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