SimpleSearch - Line and FST details


Line specific information

 
Line ID 346C01
Vector Used pAC161
Line Availability available as T3 set from NASC (N433145)
Segregation Analysis 50:49:44
Confirmed for Hit At1g60350
Parent of DUPLO pair none
Parent of pair(s) 10814, 10820, 96798, 96801

Gene hit At1g12380

 
Sequence (A. th genome BLAST matches underlined) 
>03-K016234-022-346-C01-8409
ATGAAGCCATTCACATTGAATATGATCATGTATGCTGGTGGTCCTCTATATAAGGTGTTT
AGGTTTCATGAAACGGAGAAAGAAAGATACTTCTGTGGCGGAGAAGATGTGAAGGTAACT
TGGACTCTATGGGATCTCCCCTATGGTGAGATGGGATTTCCCTTTGTGTCCTATTGTCTA
CGTGGGATGAGTTCAGAATTTGGGCATAAAAGGGTAGAGTGAGAATTTAATTTTTGTTTC
TATGGGATCCTCCCCTATAGTGAG
GenBank Accession AL952809 [GenBank]
Graphic View Graphic view of gene At1g12380
Predicted Position of Insertion Chr1:4217667 - go to primer design
BLAST e Value 1e-41
Hit Clone Code (BAC ID) F5O11
Hit Gene Code At1g12380 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At1g60350

 
Sequence (A. th genome BLAST matches underlined) 
>03-K016240-022-346-C01-8409
ATGAGCCATTTACATTGAATATGATCATGTAGGCTGGTGGTCCTCTATATAAGGTGTTTA
GGTTTCATGAAACGGAGAAAGAACGATACTTCTGTGGTGGAGAAGATGTGAAGGTAACTT
GGACCCTATGGGATCCTCCCTATAGTGAGAAGTGATTTCAATTTGTGTCCTATTAACTAA
AATTTGATCATTTGAAAATTAGTTCTTAATAAGAAAGGATTCAAACCCAAATTTATGATT
CTACGGGGCATTACCGATATAAAGTTGGGACCCTTCATCCAATTATGGAATCCTTATTAT
AGTGACACCTCAAATCCCACCCCAGCGGGTAACCCCTTCTCCCTCCTTCCCGCATCAACC
GTTTTAACTCCCCCACTGCATAAACGTATAACTAACCCCCCATCAGACTATCCCACACTC
CGTCATTCCAACCCTACGCCCAATAAAATCAATTCCCCCTCTTTACGTCTAGAATAACAC
GenBank Accession AL952810 [GenBank]
Graphic View Graphic view of gene At1g60350
Predicted Position of Insertion Chr1:22241431 - go to primer design
BLAST e Value 3e-29
Hit Clone Code (BAC ID) T13D8
Hit Gene Code At1g60350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAC domain containing protein 24
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37