SimpleSearch - Line and FST details


Line specific information

 
Line ID 347C07
Vector Used pAC161
Line Availability available as T3 set from NASC (N433247)
Segregation Analysis 50:28:18
Confirmed for Hit At3g50840
Parent of DUPLO pair 11786
Parent of pair(s) none

Gene hit At3g50840

 
Sequence (A. th genome BLAST matches underlined) 
>51-K016241-022-347-C07-8409
TCGATGTTCTTGAGAAAAGATACTCTGAGAAAGATTTAATCCTTGGGCGTATTTGTGCTT
GGCGCCAGTCTAGACTGACGAATCAGGTAAAAACTCCTCCTTCTGCTTCTCTACTCGATC
CGGATCTTATAGAAGTCGAATACCTTGTGTCTGGTGTTAAACTGCATTCGTGCGATGTGC
TTAACCCTAGCCAGATTGATTCTGGTGAATTCAGTACTGAGAAAGGCGTGATTGAGTGGA
TCCATCCTTGGGCGGAATGGATGGAGTCGATGGTCAGATTGGAGAACAAAATTACTTTGT
TCATAGGAGAGAATCATATGATAATGATATGGTGAAGAGGCAGGCGATTGATAGAACAAT
GGCGATCTCTCCCCTATCAAGAGGACGGACAAGTTCTGTTTTTGGAGAAGCTACTGCTCC
GGAAAGTAGTCACTGGGACTTTCCTGAAGGAGGAAGACCGGGATAAAACGGTGGTGGACT
TGGGCACATGCAACGAACCGGTGAAGGAAAATCCGGTGCTTCTCTTGGATATGGACACGA
TGATGACACGAGTGAACCAGCTAGCCATTCCATAATGGAGTCGTTATAGGTTTATCCGGG
AACCTTTTCGAATACAAAACGAACGCCCCCTTTTTTCCATCGCCCATAATCAGGGTTGTA
CCCTAAATTTTGCGAAACAAAAAAAAATTTTCCGATTTTATATTAATTAAGATGA
GenBank Accession FR808466 [GenBank]
Graphic View Graphic view of gene At3g50840
Predicted Position of Insertion Chr3:18897147 - go to primer design
BLAST e Value 1e-49
Hit Clone Code (BAC ID) F18B3
Hit Gene Code At3g50840 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Phototropic-responsive NPH3 family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR808465 [GenBank]


Last Updated on 10.06.2021 13:37