SimpleSearch - Line and FST details


Line specific information

 
Line ID 350F01
Vector Used pAC161
Line Availability available as T3 set from NASC (N433565)
Segregation Analysis 60:57:50
Confirmed for Hit At1g68990
Parent of DUPLO pair none
Parent of pair(s) 1892, 3029

Gene hit T13D4

 
Sequence (A. th genome BLAST matches underlined) 
>06-K016245-022-350-F01-8409
AGCTCATATGTATCCCTCGCGGGGATACCTTAGTCTTCTTCATCAAGGACTTAGTGGCTC
TTGTGATAATTTCGGGGACATAATCTTCGTCTCCACCGAGGTCTTCCTCGACGAAACTTC
TCTCTTCATCCATACCTCTCTTACCTCTTGCAGTTTCCTCTCTTCTTCTATCACTACCTA
TGGGATCCTACCCCTATATTGCAGAGAAGCTGCAATATCCCATATCCCCATCCACCAGGT
ACTCGCTATGGGATCCTCCTTATAGTGAG
GenBank Accession AL953366 [GenBank]
Graphic View Graphic view of sequence AL953366 of line 350F01
Predicted Position of Insertion Chr4:5048020 - go to primer design
BLAST e Value 1e-50
Hit Clone Code (BAC ID) T13D4
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g68990

 
Sequence (A. th genome BLAST matches underlined) 
>62-K035339-022-350-F01C-8409
TGAGCCATTTACAATTGAATATATCCTCGCCCACGAAAATCAACGTTGTGAGGGTAGTAG
AAACCTTCCTCATCCTTCATTTTACGTGCCACCTGATCAATCAATTGAAAGCACAACGAT
GGTTTTATACATCACAGCAGCAAAAAAGAGTGCAAAAAGAAGTCTTCTCTTACCTCGAGT
TTGAGCTCTATATCACACCTTTGTGAATGTCTCTCATTATTTTGCTTAATTGCTTTTTTG
GATTCCCATCTCCAATTTTTAAATTTTTCTTGGTCTTCCCTTTCCGGCTCTTCTGGAATG
GGTACCTTTTGTAGTTTATAAAGAGGTGAGAAAAAATCAAAATTTCTAAAAGAGAAGTAG
GAATCAAAATTACTTCCTTCTTCTGAAGAAGATGGCTAGCGGATGGGTGAATAAGAACTA
CAAGTAGATCCGCAAAGAAGAGAGGGAGAGATCTTACATCTTCACGGTCAACCAGACCAC
CAATGCGACCTCCATTAGCCCAGATTCTGTCCACCAAACTTAA
GenBank Accession HG968913 [GenBank]
Graphic View Graphic view of gene At1g68990
Predicted Position of Insertion Chr1:25938044 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T6L1
Hit Gene Code At1g68990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation male gametophyte defective 3
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL953367 [GenBank]


Last Updated on 10.06.2021 13:37