SimpleSearch - Line and FST details


Line specific information

 
Line ID 353A11
Vector Used pAC161
Line Availability available as T3 set from NASC (N433803)
Segregation Analysis 50:45:31
Confirmed for Hit At3g21240
Parent of DUPLO pair none
Parent of pair(s) 5760, 5779, 5834, 10421

Gene hit At5g61140

 
Sequence (A. th genome BLAST matches underlined) 
>81-K016363-022-353-A11-8409
TGATCATGAAATTTCCCGGACATGAAGCCTTTACAATTGTGTTTGAAAGTTTTAAAAATT
GAATACTAAAACGGCTCTGTTTCTAAACTTAACGTTTTGGATGTTGGTTACTACGAGAAG
GGCTATGGGATGACAGAAGCAGGTGCCGGTGCTATCGGACTCTGACCCAGCACGTGAGGT
AACGTCTTGACCATGAAAAATTGGTTCTCCTAAAGTAATTCTTGAAGTTGTAATTTCACT
CCTTATGTTGCAGCAGGTTACCATCTGTCTGACTTTTGCTTTGTTTATCAGGCGGAGTCA
ACTCAGACAATGATAAGAATTGTAGGCCTGTCAGCCACTTTACCTATGGGATCCTCCCTA
TAGTGAGAATGACAAAACGGTGCACGTGGATACGAATTTAAGAGATGATGACGCTGTTGT
GCCTATGGGATTCTATATATACTGTGAAAGCACTTTTACCCGTTCTGCTAAGCTGTGGCT
ATCAGTGGCTTGGC
GenBank Accession AL953655 [GenBank]
Graphic View Graphic view of gene At5g61140
Predicted Position of Insertion Chr5:24593432 - go to primer design
BLAST e Value 6e-89
Hit Clone Code (BAC ID) MAF19
Hit Gene Code At5g61140 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation U5 small nuclear ribonucleoprotein helicase
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g21240

Sequence (A. th genome BLAST matches underlined) 
>81-K016362-022-353-A11-8409
TATCCTGAAATTTCCCGGACATGAAGCCATTTACAATTGTGTTTGAAAGTTTTAAAAAAT
TGAAGACTAAAACGGCTCTGTTTCTAAACTTAACGTTTTGGATGTTGGTTACTACGAGCA
GGGCTATGGGATGACAGAAGCAGGTCCGGTGCTATGGGATCCTCCCTATAGTGAGANNNN
NNNNNNNNNTNNNNNCNNNTNTNNNNTNNNNCCNANANNNANACNNNCNCNCNNTACANA
CAANAACCCCCACCACCACTCCACCTTCCACACCTACACCACCATTATCTAAACCCAATA
TCCACAACACACACCATCCAATTTTTAAATCACAAATCCAACAACCTCACCTACCTCTAA
CATCATTCACCCTCTATCCCCTGTTCATTCCACCCATACACCAAACTCCACCTCATCTAT
GenBank Accession AL953654 [GenBank]
Graphic View Graphic view of gene At3g21240
Predicted Position of Insertion Chr3:7455430 - go to primer design
BLAST e Value 2e-61
Hit Clone Code (BAC ID) MXL8
Hit Gene Code At3g21240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 4-coumarate:CoA ligase 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37