SimpleSearch - Line and FST details
Line specific information
Line ID | 354E09 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N433945) |
Segregation Analysis | 100:100:81 |
Confirmed for Hit | At4g08980 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g37475
Sequence (A. th genome BLAST matches underlined) | >69-K016365-022-354-E09-8409 TGTCCTGAAATTTCCCGGACATGAAGCCATTTACATTGACCTATGGGATCCTCCCTATAG TGAGACCACTAAGCCAAAACCTACGGCATTCTCCCTATACAGAGATTCATTTGCTATAGC TGTAATGGACGAAGCAACGTCTTTAACATCTGCTGCTTTCATATTAGCCACAGAAAGTCT CATCACTGCTTTGAGTAGCCCGATATAGTGAAAGCTTTTCTGCGAAATAGTAGACATAGT TAAAATGCAGACGAATTGGTCTTAATATGATATTTGGTCATATAGAAATAAGTGACAGTT AGCTAAGACAAGAAAGTAACAGGAAATGAAAATAGCATACCTCAAATGGTACAAGTCTCT GAGATATCAACTCAGCATAATCCAAGAAATCGCTTTCAGACTTCGGAATTAACATATCGA CGCTTTTCTCTTCAGTCTTTACTCCAAAGAGTTCAGCAGTTGATTGGTAATCAGCTTCCT CTACAAGCCTAAGATAAGAAGAATATTAAAAATTAGCACAATGGCCTTCCTCAGTGACAT GCTTCTTACACTACTATGGGATC |
GenBank Accession | AL953785 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:14866620 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | T25O11 |
Hit Gene Code | At5g37475 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Translation initiation factor eIF3 subunit |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Gene hit At4g08980
Sequence (A. th genome BLAST matches underlined) | >69-K016364-022-354-E09-8409 ACAAAACCAGAAAGCATGTAAAATATTAGATACAAAAGCAATGAACTAAGAAATCATGTT GCTTCAATCACATCCCCTAATACATTCTATGCCTATAACCACTTAAAAAGCTTAATTCTA AATATGATCATAATACATTAAACTATAGCAACTTACTGTTGTGCAATGAAGGAGAANATA GAGTCATTTCGAAAGCCAGTAACGGAGAGTTTTCGCAA |
GenBank Accession | AL953784 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:5759987 - go to primer design |
BLAST e Value | 2e-101 |
Hit Clone Code (BAC ID) | T3H13 |
Hit Gene Code | At4g08980 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | F-BOX WITH WD-40 2 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |