SimpleSearch - Line and FST details
Line specific information
| Line ID | 355F11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N434055) |
| Segregation Analysis | 50:49:35 |
| Confirmed for Hit | At2g04300 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6734, 6735, 6737, 6739, 6749, 72960, 72995, 73023, 73053, 73167, 73193, 73219, 73262, 73311, 73333, 73413, 73432, 73463, 73477, 73489, 73503, 73524, 73533, 73543, 73552, 73567, 73568, 73569, 73570, 73571, 73572, 73573 |
Gene hit At4g25740
| Sequence (A. th genome BLAST matches underlined) | >86-K016831-022-355-F11-8409 ATTTCCCGGACTGAAGCATTTACTCTTGAATATTCCTGTGAGATCTCACATTCCTACATG TGATCAACCAATGTCGTGAAAAACCACATATATCTGAATGGGTTGGGGTGATGCTTACAA AAGGAGACTTGATAAGCATTATACATCCTAAATTGTATCGGAGATTATGATGCTGGTTCT GTCTGAGAGAGGAGATGAACTAACTCTGCTTCGACTCTGTTTCTCTAAATTTACATATTT ACTGAATGTACTGGAAGGAATTATCCAAGTATTAATTGTGATCTTGTTCGTCCTTTTATC ACATTATCTCAGAGAACAATCGCACAGAGATCTGCAAATACCTCTTTCAAAGGTTTGTGA GTCATGCTCTCTTTCATTTCCTTCTATTTTCAGCTATGGGATCTCCCNAAAATAGTGAGA ATGATGTCATGNGNATCNTCTGANTATAAGAACTTAGACCACAACGCAATCTCTTAAGCC TAAGTANTCGTTTCCTTGTTAGAACTTACAAAGCCGGAGGCTCATACGGACTTTGGCTAC TCCATGACAGGNTTTGAGAGGGTATGGGANCCTCCCCAATTAACGAGGATNNNNTTCCNN AAGGCGCAAAAGGGATTTTCCCGGTGGTAACGGTAAAATGCGTAAAAGATCCGGAAAAAC CACCAACGGCGAAAAGCACTTCTGCTGGTGCCGACACTTGACACTGTAGAGACAATAGCC TTTGGGATCCTCCCTTAATATAGCGGAGCGTCTNCCTTGGGGCCCCCTCCCTTTTAGTTG GCCCAAATTTATTAAACGGCGGAAACCCCCAGAAGGAGTTTTATTTAGGTAACCAAAATT TTTATAT |
| GenBank Accession | BX001392 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:13108891 - go to primer design |
| BLAST e Value | 7e-89 |
| Hit Clone Code (BAC ID) | L73G19 |
| Hit Gene Code | At4g25740 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNA binding Plectin/S10 domain-containing protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At2g04300
| Sequence (A. th genome BLAST matches underlined) | >86-K016870-022-355-F11-8409 TGTCTGTAGATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGTGAGATCATCAC AAACCAACATGTGATCAACCAAAGTCGTGAAAAACCACATATAGCTGAATGGGTTGGGGT GATGCTTACAAAAGGAGACATCAAAAGCATTATAGATCCAAAATTTAGTGGAGATTATGA TGCTGGTTCTGTCTGGAGAGCAGTTGAACTATGGGATCCTCCCTATAGGGAGAGGGAACC CGTTGATACTTTAGGTCCTGTCTTATACACTGACAACATCTGCTATCCATACGTCCGCGA CTGATTTCATACAACTAGAGACCCCATTATCCATGTTTGACACAGGAATTCACTAGAAGC ATCTTTTGGCCCCTTATCGTCTAGGGGGAAACATAGGACTATTCGGTGGGGCTGGCGTGC GGACTGCGGATCTAATTGTGGAATTGATCACAACATTGCTGGAGCTCGTGGTGGTGTATC CGTCTTTGGTGGAGTACGCAAACTGACTCGAGAATGATATGATCTTTAGATGGACATGAG AGAATCTGGAGTCATTAATGAACGATATCCTGCGGAATCAATAGTGGCCCTATGGGATCC TCCCTTTAAAAGAGACGACTTTCTTTTTTGACGAGGCCGATAATTCTGAAATAAGAGAGG AAGTGCTTGAACTCCTTTTCATGGAATACTTTGGGATATCTGGGAAAGTAAGAATCCCTT TATTTTTGAAAATATCAGGGGACCACCCCCGGAAACTTTGGC |
| GenBank Accession | BX001393 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:1496561 - go to primer design |
| BLAST e Value | 2e-86 |
| Hit Clone Code (BAC ID) | T23O15 |
| Hit Gene Code | At2g04300 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich repeat protein kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX001393 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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