SimpleSearch - Line and FST details
Line specific information
| Line ID | 357D08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N434220) |
| Segregation Analysis | 100:89:67 |
| Confirmed for Hit | At4g01070 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 69089, 97380 |
| Note | |
Gene hit At4g01070
| Sequence (A. th genome BLAST matches underlined) | >60-K016834-022-357-D08-8409 TGATCTGANATTTCCCGGACTGAAGCCATTTACAATTGATTGAAGCCATTTACCCTACAA GCTGCTTCCTTCAACTCCTTCATCTTGTTCCTCACTCCTTTGCCTTCTTCACCTTCCATC AATCCTTTTACCACTCTATGGGATCTNCCCTATAGTGAGACTGCAGAATTTCATTAATGC AGATGTGTTGATGAGTTAGAGTCTCAATTGTCAAAGCATGGAAGTCTGAAGAAATTATAT TTCTACCATCAACACCTCACAACTGTATACTTCCTGTTGTTGTTCACTGTCTACTATTTT CCCATGTCATCTTATGCATAATCTAACATTTGAGTTTTGTAAAAGGTTTTCAGAAATACA ATGTTTGGACCAGAAGGACGTCCTCAGCATTGTTGTGCATGGCTCAGTGTGGCTATGGGA TCCTCCTAATAGTGA |
| GenBank Accession | BX001614 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:461955 - go to primer design |
| BLAST e Value | 9e-42 |
| Hit Clone Code (BAC ID) | F2N1 |
| Hit Gene Code | At4g01070 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | UDP-Glycosyltransferase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g08130
| Sequence (A. th genome BLAST matches underlined) | >60-K016872-022-357-D08-8409 TGATCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATTGAAGCCATTTACCCTACAA GCTGCTTCCTTCAACTCCTTCATCTTGTTCCTCACTCCTTTGCCTTCTTCACCTTCCATC AATCCTTTTACCACCCTATGGGATCCTGCCTATAGTGAGACTTTTGGTCGCTGTTAGGTA TTAGTTGTCTCAACATCTGAAATCTGCAGAGGGATCCATTAACAATGTTTGATTAGTATC TCCACTCTGCTAAGCTATATAACCAATTCTGGTGGCTTTTGCTACATATTCAGGACTTAC CTATCATTGATCTTGCTCCTTCTCCGTTGCTCTGTAGCAGAATGTTTAGACCTATGGGAT CCTCTTTTATAGTGAGACCCCCCCC |
| GenBank Accession | CT026284 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:2607617 - go to primer design |
| BLAST e Value | 1e-105 |
| Hit Clone Code (BAC ID) | T22D6 |
| Hit Gene Code | At5g08130 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At2g35110
| Sequence (A. th genome BLAST matches underlined) | >60-K016834-022-357-D08-8409 TGATCTGANATTTCCCGGACTGAAGCCATTTACAATTGATTGAAGCCATTTACCCTACAA GCTGCTTCCTTCAACTCCTTCATCTTGTTCCTCACTCCTTTGCCTTCTTCACCTTCCATC AATCCTTTTACCACTCTATGGGATCTNCCCTATAGTGAGACTGCAGAATTTCATTAATGC AGATGTGTTGATGAGTTAGAGTCTCAATTGTCAAAGCATGGAAGTCTGAAGAAATTATAT TTCTACCATCAACACCTCACAACTGTATACTTCCTGTTGTTGTTCACTGTCTACTATTTT CCCATGTCATCTTATGCATAATCTAACATTTGAGTTTTGTAAAAGGTTTTCAGAAATACA ATGTTTGGACCAGAAGGACGTCCTCAGCATTGTTGTGCATGGCTCAGTGTGGCTATGGGA TCCTCCTAATAGTGA |
| GenBank Accession | BX001614 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:14799349 - go to primer design |
| BLAST e Value | 5e-142 |
| Hit Clone Code (BAC ID) | T4C15 |
| Hit Gene Code | At2g35110 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transcription activator |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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