SimpleSearch - Line and FST details
Line specific information
| Line ID | 358H04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N434360) |
| Segregation Analysis | 66:64:54 |
| Confirmed for Hit | At4g15620 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 9520 |
| Note |
Gene hit F13C19
| Sequence (A. th genome BLAST matches underlined) | >32-K016873-022-358-H04-8409 GATCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGTATACAAATTTT ACTGTATACAGTATACTAGGGGATAGGTTACAATAATTACAGGGTGATAACAGTGCTACT TTACATACTTTGCATGACGATTCGTGCATAGTCCTATGGTATCCTCCCTATAGAGGAGAT AGTAGCCGCACCAGATTGTCGTCGAGATTTGGAGTCGAATATGACTTGATGTGATGTGTA TGATTGAGCATAAGAAATTAAACCGCAACCGGATCTTAATAGCCTATGGGATCCTCCCTA TAGTGAGAAGGAAAGCTTATGTGACCTATCTATAGTGAGACTTACTTGATGTTCACGGGG ATAGGTAAACAT |
| GenBank Accession | FR808750 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:11853306 - go to primer design |
| BLAST e Value | 3e-32 |
| Hit Clone Code (BAC ID) | F13C19 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At4g15620
| Sequence (A. th genome BLAST matches underlined) | >32-K016835-022-358-H04-8409 GATCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGTATAAAATTTTAC TGTATACAGTATACTAGAGGAGCTGATGATTGGATTTATCGTACTAAAGTCCTGACTTCT CATCTGGTGTGACCCAAAGCGTATAACCTACTGATCTAACAATCTCGACACGCGAGAGGA TCGCTCTGATGAGAGCGAGATCGCGGTTACGAGAGAATGCCCGCTCTCCTATGAATACAC ATAAGAAGACATCGCTTCAGACACTTTCAATATTGCCATAGAAATTAACGTTACGATCCT TGATACAACCGAACTATGGGACCCGACCTATACTGAGGGAACTATCACATGCTGCTATGG GATCCTCCTTATAGAGCAGAAGGGGAAGAAGAAGCAAGAAGTTGTTAATGGGGGTTCTGC TATGGGATCCTCCCTATACTGAGATAGCTCTTANAGTCACACCGGTGCTGTTTATTCTCT TCTTCACTCTTAATGAATTATAATGGAGCAGGTTGCGAAAAACTCCTGCTATGGGATCCT CCCTATCGTGAGACCCA |
| GenBank Accession | BX001789 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:8914949 - go to primer design |
| BLAST e Value | 4e-10 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g15620 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Uncharacterized protein family (UPF0497) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g02660
| Sequence (A. th genome BLAST matches underlined) | >32-K016835-022-358-H04-8409 GATCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGTATAAAATTTTAC TGTATACAGTATACTAGAGGAGCTGATGATTGGATTTATCGTACTAAAGTCCTGACTTCT CATCTGGTGTGACCCAAAGCGTATAACCTACTGATCTAACAATCTCGACACGCGAGAGGA TCGCTCTGATGAGAGCGAGATCGCGGTTACGAGAGAATGCCCGCTCTCCTATGAATACAC ATAAGAAGACATCGCTTCAGACACTTTCAATATTGCCATAGAAATTAACGTTACGATCCT TGATACAACCGAACTATGGGACCCGACCTATACTGAGGGAACTATCACATGCTGCTATGG GATCCTCCTTATAGAGCAGAAGGGGAAGAAGAAGCAAGAAGTTGTTAATGGGGGTTCTGC TATGGGATCCTCCCTATACTGAGATAGCTCTTANAGTCACACCGGTGCTGTTTATTCTCT TCTTCACTCTTAATGAATTATAATGGAGCAGGTTGCGAAAAACTCCTGCTATGGGATCCT CCCTATCGTGAGACCCA |
| GenBank Accession | BX001789 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:1169168 - go to primer design |
| BLAST e Value | 1e-28 |
| Hit Clone Code (BAC ID) | T10P11 |
| Hit Gene Code | At4g02660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Beige/BEACH and WD40 domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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