SimpleSearch - Line and FST details
Line specific information
| Line ID | 358H06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N434362) |
| Segregation Analysis | 50:47:32 |
| Confirmed for Hit | At4g03290 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3814, 8310, 11185 |
Gene hit At4g03290
| Sequence (A. th genome BLAST matches underlined) | >48-K016873-022-358-H06-8409 TGATCTGAAATTTCCCGGACTGAAGCCATTTACATTGACATGAAGTAATGTCAGCGTTGA CCTTCTTAGCTGGGAATCCAGTCATGGATGTGAGACCGCAAGAGAAAATGGCTATTCAAA TAACCAAAAGTAAAAACAAGAGAAGGTAAAAAAAGAAGAAAAAAAGTGATTATCAGCTCA AAGAGCTAAAAAAGCGACCCTTTTTCATCATTTGTCTAAACTCCATGTAATTAACCCTAC CATCACCATCAACATCCACTTGCATTATCATCTTCCTACATTCCTCCAAGGTCTTACCTT GCTTGAGTCCCAAGGAAGATAAAACCGCTTTCAATTCATCCACCGTTATAAACCCATCTC CGTTCCGATCAAATACGTTGAACGCTTCCTTCATATCTTCTTCTCCTACCTCGTCCTCAT CTTCTACCATTATCGTCTTGTAGAGCTCTCCAAACTCTTCAATGTCAACACAACCGTCAC CATTAACATCGATCTTTTGGATAATTTGTGTTAGTTCGTCTTCGGGTATTATGATACCGA GGTTCTTGAATGACTCGTTCAGCTCCTTCGTAGTGATCTTCCCGTCTCCGTCCTTGTCGA ACATTTGGAACACACGGTTCAGCTCCGTGGAATCCATTTGTTTTAATAAATTTAGGGCTT TTTGGAGGTTGCGTGTGGAGGAAGCAAATGTGAAAAAAGAGAAGATGAGACTCCTATGGC TCCCCCC |
| GenBank Accession | BX001792 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:1443255 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F4C21 |
| Hit Gene Code | At4g03290 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | EF hand calcium-binding protein family |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g11100
| Sequence (A. th genome BLAST matches underlined) | >48-K016835-022-358-H06-8409 TGTAAATTTCCGGACATGAGCATTTACATTGATATATCCTGAGAAACAATATGGCATTTA CTCCGGGTTCTTGCCTTCTGTGATCTCGCGGGACATCCAATCAGCTATGGGATCTGCCCT ATAGTGAGAGCGTGAACAAAAATGGGTTTTCTCTTTGGTTTGATCATAGGAATCGCGGTT TCTTTCGGTTTGGTCGGCGCATTTGCTCGCTACTCTATGGGATCCTCCCTATAGTGAGAA GAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGT TATAATAAAATATTAAGTCTTACAGTTCACCTCCGCGGTGAATACCAAAGATCCACTTTT TATTTTTTTCCTTCGTCCCCTCTGGGACGGTCCAATATTTTGTAGGGCGAACGCGATCAT GAATAATGGATACAAATGCTTAGATCTGATGGCTCTATCATAGGCTACTCCACCTGCCAC TATTATCATCGATCATTCTGGACTAGTTAGAGAAGAGATTGACCTTCATTCGAGTTAAAA ACAGGAGGTACTTGCATGCCTGCATTCGGAACCACCCCTGTGATGAGCTGCGGCACCGGG CCCTATCTGCGGGTTTTGCAAAAGATGTATAATGGCAGATGTAAACCCCCTCGTTTTTTG ATGGTTCGCGACTTGCTTGCAAGCTAAACTGAAGAAAAGTGGTTAAA |
| GenBank Accession | BX001791 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:3532314 - go to primer design |
| BLAST e Value | 2e-36 |
| Hit Clone Code (BAC ID) | T5K6 |
| Hit Gene Code | At5g11100 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Calcium-dependent lipid-binding (CaLB domain) family protein |
| Insertion Classification | 5' region |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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