SimpleSearch - Line and FST details
Line specific information
| Line ID | 358H08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N434364) |
| Segregation Analysis | 50:49:35 |
| Confirmed for Hit | At2g41040 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g52130
| Sequence (A. th genome BLAST matches underlined) | >64-K016873-022-358-H08-8409 TGTCATGTAATTTCCCGGACTGAAGCCATTTAAATTGAATATATCCTATTCTAATATTTT CACCTTTAACCGAGACTAAACTCTTTTTCTCTCTCTCTTCCTCAAATAAACTACTTTTAA TCTTTGTCTTCAGCTTAAGAATTATAACAATTATGAAAGACCTATGGGATCCTCCCTATA GTGAGANAANANNNANNTTTTTTTCCCTATTTTTTTTCATTTCAAAGTGCAAATGCCCGC ACCCTTTTTATAAACACNGGTGCATATATTCACACATCCCCAAAACTTGTAGATCCAATA AGAGCAATCCACGGAAATACGAACGAACCAATTTCTAACCAAAAAAAAAGAGGAGGGAAT TTTTTTGGTGTTTCCCCCCCCCCCCCCAAGAAAAAAATGGAAAAAAACGAAAGGGGGGAC GGCAAAAAAAAAAAAAAAAAAAGCGGGGGGGGGGGGCGGGAAAAAGAGGGCCAAAAAAAA AAAAAAAAAGAAGAGGGGCGGACAACGGCGGCGGAGGGGAACAAGGACCGCCCCGCACCC ACCAACACAGAACGGGGCATTTATTTTACCTGCACACGAATCTATACGGATCGAACAACT GGAGAAAACATAGACAAAAAGGAGAAACCCCAAAATAAGGACGGGAAAAATATTGGCAAA TGCCCCGGCCCCGTGACTAAAAACCCGCACTTTATAGGCTGCCGGGATAAACGAATAAAA GGGGGTAAGATCGAACGAAACACGGTATATTAGTAAAGCAGGAACCGCACAAATTAGAAC AATCGTCTAAAACAATGATAAACACAATATAATAAAACCTGTATAAATT |
| GenBank Accession | BX001795 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:19403089 - go to primer design |
| BLAST e Value | 2e-52 |
| Hit Clone Code (BAC ID) | F5F19 |
| Hit Gene Code | At1g52130 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Mannose-binding lectin superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At2g41040
| Sequence (A. th genome BLAST matches underlined) | >64-K016835-022-358-H08-8409 GAAGAATATTCATGGAATGTGCTTGACCTACATAGGAGAGAGCTACTTCTCTTGCGCTGT GGGGCGTACTCGCACCAATGCTATGGGATCCTGCCGTATAAAGAGAAGAACTTACCGGTT GATACCTGAAGGTCCTTTCCTCATAAGTGGTTCGTAGCAAACAGGACACGCGAACACTTG AGTTTCCTCTATTTCGATCTTTGGAGTTTCATTTTTATTTATGTCCTGAAAATACCATTG TACAAGGTTTACATACATATACAAAGCTTGTAAATCAAATCAAGTGAATTAACAAAAAAG CAGAACGCACCGATTTGGGAGCAACGGCGCTTATGGCTGCGGATGGAAAACGAGAACGAA CAGAGGTAGAAGCAGAGAATCGGAGAAGAGGAGATTGTGAATCAGAGGAGAAGAAGGAAG AGCGGTTAGGTAAGAAAGGTTTGTTGAGGAGAGTAATAGCAGAAGAAGAAGATGTTAGAG CCGCCATCGCCATTTGAGCAGAGAAATGGAGCTTAAAAATCAACGAGCACAGAGAGATGT TTTGGCTCAATTTATACGAAATCTCGTTGCTCAGACAAATTGTGCGTTTCTTGTAACAGA GTCTGGAGCAATAAATGTGTTGTCCGAATTTTGAGCTATGTTTTAAGCCGGAATAAAAGA CGCACACTTCTCGTTTTCACCATTCACTTTTTCATCTATTTTTAAAAGTATATTATTACT TGGGTAACAGGATCACATGATCGAGTGGATTCTTTGCTCAAAGTCACAACGTTGTACTGG ACCTATGATCT |
| GenBank Accession | BX001794 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17121954 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T3K9 |
| Hit Gene Code | At2g41040 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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