SimpleSearch - Line and FST details


Line specific information

 
Line ID 362B11
Vector Used pAC161
Line Availability available as T3 set from NASC (N434679)
Segregation Analysis 50:50:46
Confirmed for Hit At5g41060
Parent of DUPLO pair none
Parent of pair(s) 2864, 94945, 94946

Gene hit F8A5

 
Sequence (A. th genome BLAST matches underlined) 
>82-K016994-022-362-B11-8409
AGACTGGATCTTCGACATTATTGGAGTATACCAGCGTGTCCTGCTCCACCATGTGGACAA
AAATTTTCTTCTTGTCATTGAGACGAACTACACTCTGTATGAACTGTTCGCCAGCCTTTA
CTGCCGAGTCTGTTACGTCCTCTATTGGAATCTTTGACTCGATGGCAATCGGGGATCCTC
TATGGGATCTCCCCTATACTGATGAACTTTTGACAAACATGAATGGTGGTTTAAAACTGA
AATCGTTATCTTCGAGAGAAACCGCTCTTCCCCCAAATTCAAGTTCATCGAAATAAAAAA
TTTAATAAACTCTCCCTCACTTTTACATTCTGAACCAGAATTTACCATTTTCTTTACCAC
TTCAGTTTCTTCTCCCAGTTTCCATTTTGAACAAACTAAGAAGATGGACTCGTCGAAAAA
ACTCCTGTTTCCAGACCAGATTCTGTCTTCTATGG
GenBank Accession BX002197 [GenBank]
Graphic View Graphic view of sequence BX002197 of line 362B11
Predicted Position of Insertion Chr1:22382866 - go to primer design
BLAST e Value 7e-126
Hit Clone Code (BAC ID) F8A5
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g41060

 
Sequence (A. th genome BLAST matches underlined) 
>82-K016998-022-362-B11-8409
GGACATGAGCATTTACATGTGGAATGTACAATTGGTTATATTGCTTTCAATGTCAGATTT
AAATCTGGTTTAGTAGTAGCGTATGGGATCCTGCTTATAGTGAGACAACTACCCAGAAAG
CTACACTTCTAACACAAACCCAAGTCCCAATTTTTAAGCTTTACAAGATTGGAAACAGAG
TAAACTGAGCCCATGAACGGATTAATAATTAATTTATACACAATAATAGGAAAAATAACA
GAAAACTATGGGATCCTCCCTATAGTGAGANNNNNNNANGNNNAGNNNTCTAANACTGGA
TCTNNGATAATAATAGGAAAGACAAGCGTGTTCGTGCTCCACCATGATGACGAAGATTTT
CATATTGCCCTTGGGTCGCAAGAGACTCTGTATGAACTGTTCGCCAGTCTTTACGGCGAG
CCCTGTTAGGGCCTCTATTCGAATCTTTGACTCCATGGGAATGGGGGATCC
GenBank Accession BX002198 [GenBank]
Graphic View Graphic view of gene At5g41060
Predicted Position of Insertion Chr5:16435952 - go to primer design
BLAST e Value 6e-77
Hit Clone Code (BAC ID) MEE6
Hit Gene Code At5g41060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DHHC-type zinc finger family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37