SimpleSearch - Line and FST details


Line specific information

 
Line ID 364A11
Vector Used pAC161
Line Availability available as T3 set from NASC (N434859)
Segregation Analysis 50:45:43
Confirmed for Hit At2g45950
Parent of DUPLO pair 12602
Parent of pair(s) none

Gene hit At3g55960

 
Sequence (A. th genome BLAST matches underlined) 
>81-K017002-022-364-A11-8409
TGATCTGATATTTCCCGGACATGAAGCCATTTACATTGAATATATCCGCAATTGAATATA
CTCATTGCTCAACACATGAGCGAAACCCTATAAGAACCCTAATTCCCTTATCTGGGAACT
ACTCATTGCAACGGGACTACAAGACGGCATACAGGTATGGTATCTATTTGGCGGCCATGT
ATGTTTACTCTTTTTTAGCCATACCCTATGGGATCCTCCCCTATAGTGAGACCNNANNAN
ATTATTANCTCTTGNNATCTAATCNGATTATCAAACTTTGAANCTCTTGAATGTTATTCT
ACCGCTTCTGAANCAACTGTCAAAGGAAGACGATGTACGACCGACACTTTATGATCGGTT
CCGCATGCCTGAATGGTTTGAGAAGCAAGGCATACCACCTTCGTGCTGGAAGCCTTAACC
GGTTAAGCGGAACGTAACCGAATTATCAGAGGTCTCTGGTCCACACAAAAAGGGCAAAGG
ACTTGTTTGGTACAGTAGTTTCAGCAATGAAAGCCACAGGAGAAGGAAGGCACCATTCGG
ATTGTTTATAATCTATGGAAGATTCCCTTTAAACGATAAACTCTTCACACATTCTTTGAT
TTCAAGGAAAATCCCGAAGCTTTCCTCTGGAAATTTTGGTAAATGAATCAACCA
GenBank Accession BX002419 [GenBank]
Graphic View Graphic view of gene At3g55960
Predicted Position of Insertion Chr3:20761156 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F27K19
Hit Gene Code At3g55960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g45950

 
Sequence (A. th genome BLAST matches underlined) 
>81-K016996-022-364-A11-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCGCAATTGAATATA
CTCATTGCTCAACACATGAGCGAAACCCTATAAGAACCCTAATTCCCTTATCTGGGAACT
ACTCATTGCAACGGGACTACAAGACGGCATACAGGTATGGTATCTATTTGGCGGCCATGT
ATGTTTACTCTTTTTTAGCCATACTCTATGGGATCCTCCCCTATAGTGAGAGACNACNGA
NCAGCATTCCACAAAGATCCCTTGGCTCGTCTGGGTCGGCTATGGGATCCTCCCTATAGT
GAG
GenBank Accession BX002418 [GenBank]
Graphic View Graphic view of gene At2g45950
Predicted Position of Insertion Chr2:18904812 - go to primer design
BLAST e Value 4e-38
Hit Clone Code (BAC ID) F4I18
Hit Gene Code At2g45950 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SKP1-like 20
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37