SimpleSearch - Line and FST details
Line specific information
| Line ID | 365A04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N434948) |
| Segregation Analysis | 59:33:22 |
| Confirmed for Hit | At1g68370 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 252, 9645 |
Gene hit At3g26950
| Sequence (A. th genome BLAST matches underlined) | >25-K026787-022-365-A04-8409 TTATATTTTACTAATAATGCTTTAATCCGTAACCCATCAAAAGTTGAATCTCAAAATTAT AGTTGTTTCAACTTACCCTATTTAACTTCAAATTATACTTGTTTCAACTAGACTATTTTG ATGAATCATGTATGGCATCCTCCCTATAGTGAGACCTATTGCACGTTCCCCTTTAA |
| GenBank Accession | CR396453 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:9943635 - go to primer design |
| BLAST e Value | 9e-41 |
| Hit Clone Code (BAC ID) | MOJ10 |
| Hit Gene Code | At3g26950 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR808856 [GenBank] |
Gene hit T22E19
| Sequence (A. th genome BLAST matches underlined) | >25-K026821-022-365-A04-8409 CGGACATGAAGCACTTACAATTGAATATATCCCGTAGGGAATCGCCGGAATAGTGTAGAG ATAAAACACATTTAAGTTGACGTGTTTCTTCTTTTCATTTATTATGTAACGAGTTTCTCC ATTTTTCAAATTTGAAGTAATACCGTATGGGATCCTCCCTATAGTGAGACCTATTGTTCC TTACTATTGCGTTTTCCCCCAACCAACAATAGTTGAATCGCCTAATTATAGTTGTTTCGC CTTAGCCTATTTAACTTCGAATTAGAGTTGTTTCGACTACACTATTTTGGTGAATCGCGT ATGGGATCCTCCCTATTTTGTGACCGATTGGAATCCTCCCTATAGACGCCCCGCGGACGA CAACCACAAGATGTTGCCTCGCCGTAGCCAAAGGCGCAGCGACTTGAGTTATTATTTAAC ACAAAAATATCCGGGGGGAGAAAAAAAAACATGATTTTTTCGCGTATAGCACACCTATTG AAAAGTTTTCATCAACAAAAAAGAAGAATGAGAGAGAC |
| GenBank Accession | CR396454 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:25642163 - go to primer design |
| BLAST e Value | 2e-26 |
| Hit Clone Code (BAC ID) | T22E19 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g68370
| Sequence (A. th genome BLAST matches underlined) | >25-K017044-022-365-A04-8409 CATAAAGAGATCAACATGAATATATCCTGCGTTAACAATGTCTCCGCAGTATGACAAAAT TCGGACTCATTTCACTGCTGATGGAGTGATCACTTTCAAATAGCGGAATGTTTATAACAT TCTCAGATAGAGGGTGATAGTGCTACTGATCTGCGACTCCTGGACTCTCTACCTGATTTC GAGCAGCGAAAGACAAGACTTCTTCCCTATGAGGTCCTCCCATCTAAAGAGAGGCACGCA TATATTTGCAGTTTATGGTATGACTTATTACTTTACTTACGATAGCTGGAGCATTTTTGA GACCTTAGTTTAACTGGGCCCTATGGGATCCTCCCTTATAGTGAG |
| GenBank Accession | BX002529 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:25633026 - go to primer design |
| BLAST e Value | 1e-41 |
| Hit Clone Code (BAC ID) | T22E19 |
| Hit Gene Code | At1g68370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Chaperone DnaJ-domain superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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