SimpleSearch - Line and FST details
Line specific information
| Line ID | 365C06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N434974) |
| Segregation Analysis | 50:32:26 |
| Confirmed for Hit | At1g62320 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4850, 4899, 4907, 84771, 84775, 84776, 84777 |
Gene hit At1g66110
| Sequence (A. th genome BLAST matches underlined) | >43-K017044-022-365-C06-8409 TTTCCCGGACTGAAGCATTTACATTGATAGCCAAAATCATATATATTATGAAGATTCATC AAATCTATCTGTTACTCTTCTGTGTTTATCATTTATCTCCTTCTCTCTGAGTCTCTGACA CCAAGACTTTCTCGCATATTCTCTGAAAAGATCCACGAAAATGACTTCTCATCATTACGA CGTAGCTTCTTCGTCAAACCCTCCTCCACCACTCACCGCATCACGTATCTACATCGGAAA CAAAGCAAAAGAGATTCTCGCAACACGTGACATCACCGAAATCACAAAACTCCGTCACTA CCCTCTGTTACGGCAAAGAAACAGAGCAATCTTCTTCATCTTCAAAGCTTCTCTATGAAG TCTTCACAAAACATTTCCCAAATATCTTAGTCGTCAAAACTCCTCCAAATCTACAGTTCC GGTACCGATATAACCCCAAAGATTCGATCTTTCTCACTCTATCTTCTCGATTCACTTCTC ACGGATATCGACGATTTCCGTGGTGGTTTAAAAACAGAGTCTTTGGATGTTATCAAGAAC CGTGTAAGTACTTGCCTTCTCTCGCAAGAAACTTCATATGAAGACTTTAAACTCCTCTCA AGAATCGTATCTCGTGTCTGTGTTGATGTTTTCATTGGAGACAAACCTTGGGACGAGCTC TGGTCTTATATTCTCTCATTAGATGGGAATAAAAAAGCTCTCTTGATGTTCAGTGAATTG CAAACAGCCTTGGATGAGAGTTCTTAATGCCGT |
| GenBank Accession | BX002557 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:24610360 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F15E12 |
| Hit Gene Code | At1g66110 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein (DUF577) |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR396474 [GenBank] CR396473 [GenBank] |
Gene hit At1g62320
| Sequence (A. th genome BLAST matches underlined) | >43-K017039-022-365-C06-8409 TTTCCCGGAATGAAGCATTTACATTGAATATTGAAGCAAAGAGAGATTCTATATTAATGA AAACAATAATCTTTACAGTGAATTGATCAGCACGTCGCTTCTCTGATTGGAGAAAAGATA ACCGCATTGCAGCAATTTTCTCATATTCCTTCATTAGTACATAGCAAGTCCAAAATGTGA ATGCATAAGCCATCACAAGATGTGCCCAAAACCTTTTTACCAAATTAAGAAAAATTCTAA TCATTATAAAGTTTTTAACAAAAATCAGAAGTAGCAACTACATAATTTTCTTTCACTAAC AAACCTGTCTGATCCACGTTCGACATTCGAAATCGAAAGCTTATCGATATTACTCGATGT TACATTACGAAGTTTGCTATGGACCCCCCCAAAAAAAGGAGAGACCCAANCCNACAGNNC CCGGAACCGATATAACCCCAAAGAANCGATCTTTTCTCACTCTATCTTCCTTCAATTCAC TTTCTCACGGGATATCGACGAATTTCCCGTGGTGGTTTTAAAAACAGAGTCTTTTGGATG TTANTCAAGAACCGTGGTAAGTACTTTGCCTTTCTCTCGCAAGAAACTTCATATTGAAGA ACTTTAAACTCCCTCTCAAGAATCGTATTCTCCGTGTCTGTGGTTGATGTTTTCATTTGG AGACAAACCCTTGGGACGAGCCTCTGTTCTTAAATTCTCTCAATTAGATGGGGAATTAAA AAAGCTCCTCTTGATGTTTCAGTGAAATTGCCCAACAGTCCTTGATGAAAGAGTTCTTAA TGCCCGTTTTTGGATAATGGTCTA |
| GenBank Accession | BX002556 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:23044022 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F24O1 |
| Hit Gene Code | At1g62320 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ERD (early-responsive to dehydration stress) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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