SimpleSearch - Line and FST details
Line specific information
| Line ID | 365F01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N435005) |
| Segregation Analysis | 50:45:43 |
| Confirmed for Hit | At5g48110 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6414, 6432, 6441 |
Gene hit At5g48110
| Sequence (A. th genome BLAST matches underlined) | >06-K017039-022-365-F01-8409 TGATCCGGAGATTTCCCGGACATGAAGCCATTTTACATGGAGGTTGGAATAGTGACTGGG GGAGGACATGTCACGGTTGCGATCGCCTGCTATTGGTATAGAGGGGAATGCACGAAAATA AGCTTTTGACTGGAGAAGATCAAGACCGAAATTCATTCAAACTATAGATCTAGAAATCAC TGCCTCAGAGATGATGTTGCCACCTACAAGGTACAATTTGGAATGCACACGAATCACATA TACCTATTCTTTCGTTTATATAACTTACAAAATCTGGTATGAAATGATAATTAGGATGAA ATGGCTATGGGATCCTCCCTAAATAGTGAGATTACTTCCATTACNNNCTATGGTTTATAT TAAACTCCTATCTTTACCACGTTCTTCATTCTAAATCTCACCAAANACTCCTTCTTCAAT CAAANCCAGCTTCTATGGAATCCTCCCTATAGAGAGAACTCAATTGCCCCTCTGGCTTCT GAGACTGTGTCTCTGAGATTTTTGGGAGAAGACAGCGGGGTCCTGCTCCACCATGTGTGA CGAAGATATTCTTCCTTGTCATTGAGTCGCAAGAAGACTCTGTAGTGAACTGTGCCCCGG CGCTTTACGGCGAGATGTGGTAAGGCCCCCTATATGAA |
| GenBank Accession | BX002592 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:19501699 - go to primer design |
| BLAST e Value | 9e-107 |
| Hit Clone Code (BAC ID) | MDN11 |
| Hit Gene Code | At5g48110 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Terpenoid cyclases/Protein prenyltransferases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T13M11
| Sequence (A. th genome BLAST matches underlined) | >06-K026821-022-365-F01-8409 CGGACAGNAGCCATTTACATTGAATATATCCTGAGAGTGCGCCATTTGATATTGAAAGGT CCACTCAGCAATAGTCCTTTCCACTGATTAAGCATCCCTAACAATTCCTCACATTATACA CGTGTGGCATCCCCCCTAATGTGAGCCTCCCTATACTGAGCCCTTGTGCTTCCTCCTTAT GAGTGTTCCTCTTTTTCTCATAAGTTTTTGGGGGCTTCGCGACTTGAGCCTTGAATTTTA TTCCAAAGAGGGTCCTCCCTGATACGCGCCACAAGAGGGCCTTGATATTGTGGGTGTTTA NTGGNTGGTNGAAATTCTAATGATAGTTGATCCTTACAAAACTATTGTATTTTCGTCATA TTTAATCATCCCGATAGTGTGAGGGAAGNNGCAAATGNGTAGTGAGTTGTGAGACGTTAA TTTATTAATAATAGGGGGGGGAGAAAGAGAAGAGTGTATGAGGGTAAAGCGAGGAAGGAA GAAGAAGAAGTGGTG |
| GenBank Accession | CR396510 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:22816292 - go to primer design |
| BLAST e Value | 2e-14 |
| Hit Clone Code (BAC ID) | T13M11 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR396510 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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