SimpleSearch - Line and FST details


Line specific information

 
Line ID 367G05
Vector Used pAC161
Line Availability available as T3 set from NASC (N435213)
Segregation Analysis 50:46:45
Confirmed for Hit At1g19150
Parent of DUPLO pair none
Parent of pair(s) 59456

Gene hit F16F4

 
Sequence (A. th genome BLAST matches underlined) 
>39-K017046-022-367-G05-8409
TATCTGTAGATTCCGGACATGAGCATTTACATTGAATATATCCTGGGTGAATCGTTGATA
TAAAACGGTTCTGATTGCACTTTCGCTAGGAAATAAAGAATAGTTCTCCTCCTAATTAGG
AGTGTATGACCATCAAACACATTGTGATACATAGGTCTGATCTCTCTTTCTCTGCTCTTA
ACTACTGTTCTGTGCCTATGGAATCCTCCNATATAGCGAGAGATTCTCAATTGGATCTTG
CCTATGGGATCCTCCCTATAGTGAGACATTTTTTCGAAAAAAACATCCTACAAAGTTTTT
GAAAAAAACTATGGGTTCCTCCCTACAAAAAGACAACAATCTTATGCAGCAAGAATGATA
ATTTAATTTATAAAACGCAGTATTAAAATTTTAATAACAGAGCAATATATGAGTCAAGTT
GTTTATCAAATAGTCAAGTTGTTCTTTCATACTTTCAAAGCCTTGTATCAAAAACGATAT
TTTTCTTGAATATAATTTAACATTACATTC
GenBank Accession FR808933 [GenBank]
Graphic View Graphic view of sequence FR808933 of line 367G05
Predicted Position of Insertion Chr1:7433578 - go to primer design
BLAST e Value 7e-92
Hit Clone Code (BAC ID) F16F4
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g19150

 
Sequence (A. th genome BLAST matches underlined) 
>39-K017041-022-367-G05-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGCGATATGTTTG
TTGTGAATGTAAATGCTCTGCAATAGAAGTACGTACCAATGAAGTCTTATCAATACACAT
AGCACATATCATCACCATGAATCTATGATAACATGATCATAATCAATTTTAACTCGCCGA
AAACGTACGGTGCAGTGACCAGGATCAGCCAGNATGAGCCATGAGATTCTCAATTGGATC
TTGGCTATGGGATCCTCNCCTATAGTGAG
GenBank Accession BX002873 [GenBank]
Graphic View Graphic view of gene At1g19150
Predicted Position of Insertion Chr1:6613799 - go to primer design
BLAST e Value 7e-58
Hit Clone Code (BAC ID) T29M8
Hit Gene Code At1g19150 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PSI type II chlorophyll a/b-binding protein (Lhca2*1)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37