SimpleSearch - Line and FST details


Line specific information

 
Line ID 367H02
Vector Used pAC161
Line Availability available as T3 set from NASC (N435222)
Segregation Analysis 50:40:33
Confirmed for Hit At2g39740
Parent of DUPLO pair none
Parent of pair(s) 972, 5162, 5205, 5212, 5215, 5218, 8620

Gene hit At2g47180

 
Sequence (A. th genome BLAST matches underlined) 
>16-K017046-022-367-H02-8409
CTACGTCATCAACTACTCTAAACTCCGTATCTGGAAGGACGTTTAATACGCCATCGTTTA
ACACCTCTTTTGTTGTGTTTAGCAATACGTCGTCGCCTATGGGATCTCCCCTATAGTGAG
ACGCTACTACAAGTGGATACNCCGATTTGCCTTTCCTTAAGCCTTTGGCTAAGCCAACGA
GTCCTTTACACGTAATCACCGCTTCCAGCAAGAAACGACTCGTAAGCGCGATCGCTGTCT
TGGACTGATGGCAGTGACGGATTTGTGATCGTCGCGGAGGACGTAGCATCAGAGGCTTGA
GTAAGCCCCGGAGCCATGTGATTAGCACGGGATCTGCAGAGAGGATTGAGAGTTTACCTA
TGGGATCCTGCATGGACTGAGAAAGAGCAAGATCTTGTTCTGGATCAGTGAAATAGATGG
GAGATTCCGCGACCTGGTTTTACTATGGGATCCTCCTTATAGTGAGAANAANGAGACAGC
CCGCGGCCATTGGCGTCTGGTGGAAACGGGGAAAAGTCTGGAAAGGGGGAACGTACCCGG
AGAAATTTCAACCAAACGGTTATAC
GenBank Accession BX002888 [GenBank]
Graphic View Graphic view of gene At2g47180
Predicted Position of Insertion Chr2:19370100 - go to primer design
BLAST e Value 2e-73
Hit Clone Code (BAC ID) T3D7
Hit Gene Code At2g47180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation galactinol synthase 1
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g39740

 
Sequence (A. th genome BLAST matches underlined) 
>16-K017041-022-367-H02-8409
TGATAAGGAAGAGGTGATTCATTTAGGCTTCTATTTTTTTCTTCTTTTTTTGGCTTTCTC
TTTGCTTCACTGTTGTTTACCTTATATACTACTTAAGTAGTTTAAGTATTATTTCATGTG
CCGATTTGTCTCACATCCATTATCATTCAAAAAACAGGTCTATGGTACAAACTGCAATTT
GTTATTCATGCGCGAGTTCCTATTCTGAAAGTAGAGAGCGGCCACCACAGAATTTCTTGT
GACATTTCTATTGATAACCTGCATGTGCTTTTGAAGAGCAGGTTCTTGTTCTGGATCAGT
GAAATAGATGGGAGATTCCGCGACCTGGTTTTGCTATGGG
GenBank Accession BX002887 [GenBank]
Graphic View Graphic view of gene At2g39740
Predicted Position of Insertion Chr2:16576734 - go to primer design
BLAST e Value 2e-148
Hit Clone Code (BAC ID) T5I7
Hit Gene Code At2g39740 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Nucleotidyltransferase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37