SimpleSearch - Line and FST details


Line specific information

 
Line ID 369B07
Vector Used pAC161
Line Availability available as T3 set from NASC (N435347)
Segregation Analysis 50:16:9
Confirmed for Hit At2g24990
Parent of DUPLO pair 12463
Parent of pair(s) none

Gene hit At2g01980

 
Sequence (A. th genome BLAST matches underlined) 
>50-K017093-022-369-B07-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATAAAAAATAGTTAAAGTT
AAGTATATCATGTGCCTTATGCAGATATGGTTCCAGAGAAAAAATATATGGTTCCAAGAC
AGTACATCTCTAACAGGTACTTAATAATAATAACAGACTGGTGAAAGAATACAATTGTCT
CAGTCCTATGGGATCTCCCCTATAGTGAGACCAGAAGCTTTTTCAAATTCAAAACATCAA
TTTGATAAGAAACGTTACCTCTAAAGGAGAAGCACGAACATGACTATGGGATCCTCCCCT
ATAGTGAG
GenBank Accession BX003071 [GenBank]
Graphic View Graphic view of gene At2g01980
Predicted Position of Insertion Chr2:459499 - go to primer design
BLAST e Value 3e-79
Hit Clone Code (BAC ID) F14H20
Hit Gene Code At2g01980 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sodium proton exchanger, putative (NHX7) (SOS1)
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g24990

 
Sequence (A. th genome BLAST matches underlined) 
>50-K017093-022-369-B07-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATAAAAAATAGTTAAAGTT
AAGTATATCATGTGCCTTATGCAGATATGGTTCCAGAGAAAAAATATATGGTTCCAAGAC
AGTACATCTCTAACAGGTACTTAATAATAATAACAGACTGGTGAAAGAATACAATTGTCT
CAGTCCTATGGGATCTCCCCTATAGTGAGACCAGAAGCTTTTTCAAATTCAAAACATCAA
TTTGATAAGAAACGTTACCTCTAAAGGAGAAGCACGAACATGACTATGGGATCCTCCCCT
ATAGTGAG
GenBank Accession BX003071 [GenBank]
Graphic View Graphic view of gene At2g24990
Predicted Position of Insertion Chr2:10625790 - go to primer design
BLAST e Value 4e-35
Hit Clone Code (BAC ID) F27C12
Hit Gene Code At2g24990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Serine/threonine-protein kinase Rio1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37