SimpleSearch - Line and FST details
Line specific information
| Line ID | 370D07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N435467) |
| Segregation Analysis | 50:35:32 |
| Confirmed for Hit | At3g27950 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7039, 94958 |
Gene hit At5g44890
| Sequence (A. th genome BLAST matches underlined) | >52-K017073-022-370-D07-8409 TGATATATNNCTGTTGAACATGTCTAACAAATAAGTTGCCATGATATAAACTAATAAATG TCTATGGGATCTTCCNTATAGTGAGCACCNANACTCGCTAGGATGTATTCCGTCTTCTGA AACTCGTAGGGACCCTCCCTGGCCCCCGTACAAGCATTTGATCTGCGGGTATCCTTCCTG GCGTCCGTGCTCACGTTCGCCATCTCGCGGAATCTTCCTGCTACGAGGGGAGCTGACCTA TATTGCACCGTTGCTAACATGAGCAATGCTTTGACTACTCGTCCACTACCTTGAGTTCCT GCGGTTAGAGGATACCTCTTGGTTCTCCCCATTATGAGCATTTCCATTCGGAGTGGAACA CCGACTGGTGCCGCTTTCAGGTCAGGTTGGGCCCAGGACGAATAAGATCTATCTGCTGAC TACACGTTGCGACTAATAAAACAGGAGCTCTTATTCTAGGCGTCCATGTTTTCGGGTGGT GTGGTCCCTGATTCGCTACCCGATGCAAGGAATGCCCACAGTGCTGTATGCACCACTTAT GACTGTGTTGATGAGGATACCATAAAACCTGATGCTTCCTTGC |
| GenBank Accession | BX003236 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:18130012 - go to primer design |
| BLAST e Value | 4e-75 |
| Hit Clone Code (BAC ID) | K21C13 |
| Hit Gene Code | At5g44890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At3g27950
| Sequence (A. th genome BLAST matches underlined) | >52-K017073-022-370-D07-8409 TGATATATNNCTGTTGAACATGTCTAACAAATAAGTTGCCATGATATAAACTAATAAATG TCTATGGGATCTTCCNTATAGTGAGCACCNANACTCGCTAGGATGTATTCCGTCTTCTGA AACTCGTAGGGACCCTCCCTGGCCCCCGTACAAGCATTTGATCTGCGGGTATCCTTCCTG GCGTCCGTGCTCACGTTCGCCATCTCGCGGAATCTTCCTGCTACGAGGGGAGCTGACCTA TATTGCACCGTTGCTAACATGAGCAATGCTTTGACTACTCGTCCACTACCTTGAGTTCCT GCGGTTAGAGGATACCTCTTGGTTCTCCCCATTATGAGCATTTCCATTCGGAGTGGAACA CCGACTGGTGCCGCTTTCAGGTCAGGTTGGGCCCAGGACGAATAAGATCTATCTGCTGAC TACACGTTGCGACTAATAAAACAGGAGCTCTTATTCTAGGCGTCCATGTTTTCGGGTGGT GTGGTCCCTGATTCGCTACCCGATGCAAGGAATGCCCACAGTGCTGTATGCACCACTTAT GACTGTGTTGATGAGGATACCATAAAACCTGATGCTTCCTTGC |
| GenBank Accession | BX003236 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:10379758 - go to primer design |
| BLAST e Value | 3e-11 |
| Hit Clone Code (BAC ID) | K24A2 |
| Hit Gene Code | At3g27950 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | GDSL-like Lipase/Acylhydrolase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MLE2
| Sequence (A. th genome BLAST matches underlined) | >52-K017094-022-370-D07-8409 TATCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGTAATAGACATGT AGATTTTATTATACTCATTGGATATTAACTTCTCTCTTTTTATTTGTTGTCTTCATTTAT TGAATAATAACTTTCTACTGTATTCCTTGTTTTCATATTTAGTTTGTTCCAAGAGAGTTA AAAAAACGGGATATTCTTTTCTTTTTCCTATGGGATCCTCGCCTATAGTGAGACCCNAAA AAAAAAAAACCGGAATCCCAAACCCCCTCCCAAAAGGGTGAAAAAACCCAACAACCCCCG TTTTTTTGCCCGGACCCCCGGTTTTAACCACGGGAAGGGAATTTTTCCGGGCCTCCCCCC CCCTTTTTCTCACCCCCCAAAAAAACCCCCCTCCCCCCCCCCGAAATTCGGCTTTTTCTC CCAACTAAAACCCTCCCCCCCGCCCCCGGCGGGAAAA |
| GenBank Accession | BX003237 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:25437595 - go to primer design |
| BLAST e Value | 8e-58 |
| Hit Clone Code (BAC ID) | MLE2 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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