SimpleSearch - Line and FST details
Line specific information
| Line ID | 373B06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N435730) |
| Segregation Analysis | 51:50:46 |
| Confirmed for Hit | At1g04180 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g04180
| Sequence (A. th genome BLAST matches underlined) | >42-K017159-022-373-B06-8409 GATCATGTAGATTCCNNGACATGNAGCCATTTACAATTGAGGTTGTTCTAACCCTCCATA GCCCACTATGGGATCCTCCCTATAGTGAGATCACTAAGATTTTCGTGAGGCTAAGCAACA AAATTACTATAATGTAGTGTATGGATAATTTGCCTATAGGAACCTCATTATCGATTCGAA TATTGAGATTGCATATATCTCCCTATTGTGAGCTTCTTAAGTCCAACCATCACACACTAA ATGTGTGTATGAAGATCTCATGTATCCGCTTTTTTTAAATGTTGTAGATACTATAAGACT TTTGCGATTTTATGAATATAAATTGATCGCTAAGCTAAGGGAGGGTCCCTACGTATACTA TGGTACGCTTTTTTTTACGAGAGGCGCGGCCCTGTAAATACTATACTATATTAAGATTGC ACTAGGGAGGCTAACATATCGTGCGCCTACTTAAACTGATACTCAAACTATGGGGATTCC GCCTATGGAATCCTCTGTAGTGTCGCCGAACGAGTAATGACTCCCCANGCGGGATACTTA A |
| GenBank Accession | FR809031 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:1105033 - go to primer design |
| BLAST e Value | 6e-06 |
| Hit Clone Code (BAC ID) | F20D22 |
| Hit Gene Code | At1g04180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | YUCCA 9 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g51538
| Sequence (A. th genome BLAST matches underlined) | >42-K017165-022-373-B06-8409 NNGGAAAGGTGTAGATTTCCNGGACATGAGCCATTTACAATTGAGGTTGTTCTAACCCTC CATAGCCCGCTATGGGATCCTCCCTATAGTGAGATTTGGACAAGCCATTTAAAAAAGGTT ATCTCCGAAAAAAAGAGGGAGAACGATAATGGCGCTGGAATGGAACAACTTCTTTATATG GTTACTCGAAAGAAATTAATTTGTTTATCGCACCCTAAATAAACAAAAGGAGGGCGGGTT GACTAATCTAGACATGGCTCCAACCCGAACAAATTAAAAGTATACCGAAAACAGTAGCAT TTGTTGTGATTCAGACCGGAAAAAAACAAAGGAGTGGGACAAGAGGACTCGGAGAGAAAC CAAAACCGATTAGGGTTGGATTCCCCCCCCCCCCCCCCCCGGAAGATAAGGAAAATAAAA GGGAGGGGGCGGGGNCAAAAAAAAAAAAAAAAAAACNGGGGGGGGGGGGGGGGGGGGNNN CNCCNNCCAACAAACACGAGAGACAGAGGAGAAGAAGGAAAGAGAAAGAAAGGAAGGAGG GAGAAGGGAAGGAAAGAAAGGGAGAAGGGGGAAAAAAAAAAGGGGAAAAAGGAGACAAAA AAAGGGGAGCAAGGGAAAAGGAGGAACGAGAGAAGGGAAAGAAAGGGGGGGGGGGGGGGA CAAAAACAAAAGGGGGAGGAGAGAAGGGGAGGAAGAACGGGGAAAAAAAAAAAGAAAAAG AAAAAGAGGGGGGGGAAAAAGGGAGAGAAAAAGAAAAAAAGGAAGACAGGGGGGGGGGAA AACGAGAAAAAAAGAGGGGAGAAAGGGGAAGAAACAAAAAAACAAGAAGAGGAGAGGAGA AACAAAGGAAGAGGGGGCGGAGAGAGGGGCAGAAAGGGAAAAAAAGGGACGCACACAGCG GGGACACGAGGGAAAAGGGAGGGGGGCAACAAAACAAAAGAAAAAAGAGGAGAAAGGGGG AAAGGGAAAAAAAAAACAGAAGAGGGGAAGGGAAGGAGAGAAAAGAAAACA |
| GenBank Accession | BX003579 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:19113134 - go to primer design |
| BLAST e Value | 2e-24 |
| Hit Clone Code (BAC ID) | F5D21 |
| Hit Gene Code | At1g51538 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Aminotransferase-like, plant mobile domain family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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