SimpleSearch - Line and FST details
Line specific information
| Line ID | 374F11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N435879) |
| Segregation Analysis | 50:47:43 |
| Confirmed for Hit | At5g24060 |
| Parent of DUPLO pair | 11961 |
| Parent of pair(s) | none |
Gene hit At5g24060
| Sequence (A. th genome BLAST matches underlined) | >86-K017166-022-374-F11-8409 TTCCCGGACTGAAGCATAAGACAGGTTTTTTCCATGTGAAGTTCCTCAATAAGACCACGA AAGCTTTTCAAACCTCGTCATCTTTGTCTTCTCCTTCATCCTCATCTCCCTTGTTTTCAT CCTCAACTTCACTTTCACCATCTTCGATTTCTTCAATCCCAAAACCAATACCAGATGGAC TGCTCAGCTCCATGTCCTTGATCATCTCCATCGTATCAAAACCTACTATTACTTGCTGCA TTGCAAATGTCACTTATCACAGTTATATCTCCATACAAGTGAATAGAGAAAAGAACAAAA GCAACTGTAAAGAAAACACCATGCAGCAGAATCATTTAAACTAAAGAAAAACATATATAT ATATACACAAGGATATAAAATAAAGCAGTGGCACCAACCTATATGACTACTATTGAAGCA TGCTTATGCACGTTTAGATTCAGAAGATTGGAAAATTAGCAAAAAAAGGAAAAAGCAAGA GTAATAAGAAAGGAGCTTTAGCTGCCGTTCCAGAAGAAAGCTATGGG |
| GenBank Accession | BX003761 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:8131507 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MZF18 |
| Hit Gene Code | At5g24060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pentatricopeptide repeat (PPR) superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g58390
| Sequence (A. th genome BLAST matches underlined) | >86-K017160-022-374-F11-8409 GATACATTGGAATATGTTTCTGCGATGCTTGTGATACAGTAGAAACCCTTTTATTTGGGC GAAGTAAAACCCTTAAATTATTGTTGATAAGTAAAACCCTTAAATTATTGTTTGATTATT GAGTTATTATGTTTAAAAATAATGTAAAACCCTTAATAAATCTTGAGAATTAGCGCATTG TGAGTTACGATATAAAAGCTTCACGGTAGTTGCTTTTATAAACTATGGGATCCTCCCNTA TAGTGAGACATGGAATAACAGAGACTTCTGGATAGTTTCCTGCATGGAGAAGAATCATAT CTGCACTTGATTCCATACAGTGTTATTCACTGGGAGATATATTTCGCCACTGATGCCAGC CTATTTTCCTACTATTGGAGCATGACTATGAATCACTAGTATTCTTACCTATGGGATCCT CCCCTATAACGAGAACAAGCAAGAGTAATAAGAAAGGAGCTTTAGCTGCCGTTCCAGAAG AAAGCTAG |
| GenBank Accession | BX003760 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:21694590 - go to primer design |
| BLAST e Value | 1e-102 |
| Hit Clone Code (BAC ID) | X7J |
| Hit Gene Code | At1g58390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Disease resistance protein (CC-NBS-LRR class) family |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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