SimpleSearch - Line and FST details
Line specific information
| Line ID | 377A01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436097) |
| Segregation Analysis | 50:50:48 |
| Confirmed for Hit | At3g25180 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4301 |
Gene hit At3g25180
| Sequence (A. th genome BLAST matches underlined) | >01-K026822-022-377-A01-8409 TTGTTTGTGAGATTTCCCAACCTACATATCCTGGTTAGCGACAGGTGAAAATTACATGTG CATACCAAAATTGTTGCCTTCACAATGACATCGCGTATGGGATCCTCCCTATACTGAGAC CTATTACCAGCTGCCCAAATCTCTAATGCCGTATGGGATCCTCCCTATATTGAGACCTAT TGATCTTTCCTCTATCGGAAACCAGTTAAAGACGAGTATGCGAACTCCCCTATAATGAAA ACTGCGAGCGAAGGGAAGCGTCCCATGCAGAGAGAATTGAGGGAGGGGCACAGAGAGCAG CGGGAACATACAGCGAGTGGAGAGGGAGTAGAAGTCAAGGGAAGAAGCGAGGGGAGAAGA AATGGAGAAGA |
| GenBank Accession | CR396539 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:9168243 - go to primer design |
| BLAST e Value | 4e-24 |
| Hit Clone Code (BAC ID) | MJL12 |
| Hit Gene Code | At3g25180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cytochrome P450, family 82, subfamily G, polypeptide 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g24230
| Sequence (A. th genome BLAST matches underlined) | >01-K017229-022-377-A01-8409 TGATCATGAGATTTCCCGGACATGAAGCCATCTTAACTTAGATTACAATTATAAACATAA ACATTTACTAAAAAAAAAGGTTTCAAAGCATTTGAAGCAACAAAAGTAGAAGTTAGTTAT TAAGACTGATGCACAAATCATATTCACCATTAAACATGGGATCCCACCATTGATGAATCC CATGAGCTCTCTTAAAATTCGGCGATTTGCTATGGGACTCCNNCCCAAAGGAGAGAGTGT ATAAAATTCTCCCGACAGAGAGACAACATCAAGAGGTTGGAGTGATTTGGTTTGGTCTAT GGGATCTCCCCCTATAGTGAG |
| GenBank Accession | BX004056 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:8230895 - go to primer design |
| BLAST e Value | 5e-56 |
| Hit Clone Code (BAC ID) | MOP9 |
| Hit Gene Code | At5g24230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Lipase class 3-related protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At5g24750
| Sequence (A. th genome BLAST matches underlined) | >01-K017219-022-377-A01-8409 GACTCCATCCTGAAATCATTAATTTTTGGATACCTTATGACTACCAGTTGCGCAGAAATT ATTCTGAACTATGAACTGAGAAAAAACTACGCTACATCCTAAAGACAAGAAGAACTCCTT GTGAAGAAAGGATACTTTGATTCTGGGGGCATGGATCACGACGGAGAAGAATAGTAAACT GATCGTAAATAGTTACCTCAAGAGATAATATTTCAGCAATTTCCATGGCACGAGCCCTAT GGGATCCTCCCTAATAGTGAG |
| GenBank Accession | BX004055 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:8490811 - go to primer design |
| BLAST e Value | 4e-87 |
| Hit Clone Code (BAC ID) | T4C12 |
| Hit Gene Code | At5g24750 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | UDP-Glycosyltransferase superfamily protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR809096 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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