SimpleSearch - Line and FST details
Line specific information
| Line ID | 377B04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436112) |
| Segregation Analysis | 50:50:42 |
| Confirmed for Hit | At1g15690 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note | |
Gene hit At1g15690
| Sequence (A. th genome BLAST matches underlined) | >26-K026822-022-377-B04-8409 TAAAACAAGACGCGACCGAATACTATGGTGGATTTCTAAATTCTAAACAGAACAAAAAGA AAACAGAAAGACAGAGAGTGAGAGAAAGAAACATCATTTGGTTGGTTCTTTAAATGAGCC TCATCAACAAAAAAGGTTTTTTAACCACCTACGGTAAACGAAAATAAGAATGGTAAAAAA GAAAGTTTAGAATCGATCGCCATCATCATCTTCTTCTTCTTCATCATCGTCATCTTCTTC CCTCGGATTGAGTTTAGAAGTATGGGATCCTCCCTATAGTGAGACTTATTACTCACCCCC TTATGGAGTTTCACTTATTAATATATTTGAAAACCGCAAATGATGGAAGTGTTAATATAT ATGGAAAAGAAGAGGAGGCTAAAAAAAAAAGTATACAGGAGGATTAAAAAAGCATATTTT TTTCCCCCCCCCCTGCTGTAAATAAACATAGAAGAAAAAAAGAAGAAGCAAAGTTAGTAA TATACGA |
| GenBank Accession | CR396548 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5402429 - go to primer design |
| BLAST e Value | 6e-54 |
| Hit Clone Code (BAC ID) | F7H2 |
| Hit Gene Code | At1g15690 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Inorganic H pyrophosphatase family protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g05690
| Sequence (A. th genome BLAST matches underlined) | >26-K017219-022-377-B04-8409 ATTCCGGACATGAGCATTTACTATTGATATATCCTACCATGAGTATATGATCATGTGTTT CCGGCGAAATTCACAGCCTTTCCGGCGAGCTACATCATGCTCAGTCACTCTCGACCCTCA GGTAAACTCTAAAGATCTTCTTCCTACCTATGGGATCTCCCCTATAGTGAGAATGGNTGA GCCTATGGGATCCTCCCTATAGTGAGACCTTTCCTTGAAGAAGTAAGAGATGGGAAGAAG TAGTTGGGGGAAAAATAAAATTTACGGTGAAAGAAAGAAATGGGACAGAGACTACGACAA TGGGAGCATAATGATATGGGCATGATGGCCTCTAAATGTCTCCATCATTTACGTTTCACA CTGGTGCCTATGGGATCCTCCCTATAGTGAGAATTNTAATTTCCCGGTCATTTTCCTTCT ACTTTGCCTCCATTTGTTCTCAGCTCGGTGTTTCTCTGTGAACGAAACTAATCTGGGTAG TGTATTGAAGAGCCTCTTCTTCTTCCTATTACTTCATCTAAGCTGTCTCCTGGATCTA |
| GenBank Accession | CT026308 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:1705136 - go to primer design |
| BLAST e Value | 8e-61 |
| Hit Clone Code (BAC ID) | MJJ3 |
| Hit Gene Code | At5g05690 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cytochrome P450 superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 038B01 |
Gene hit At4g21326
| Sequence (A. th genome BLAST matches underlined) | >26-K017229-022-377-B04-8409 TCCGGCGATATGCGCAGCCTTTCCGGCGAGTTACTTCATGCTGCAGTTTCGCTCAATCCT GCAAGTATAGCTCTAAAGAACTGCTTCCTAGTCGTGGAATCTCCACATATCTGAAGAGAC TCGAAAGAGATTACTGCAAATGTTGGCTTATTCTTCTCGCTCGTCGATCATCATTAACCT AAGCTTCTCTATTTCCTCTCTATCTTTTTTCTCTATTTTCCTTTTTGTTATTGAAATAAT TGCGAACGTAACCTAAATTTCGAGGTATCTAATTTGAGATCTTGTTAATAGTTCGAAATT AAACCCTAATTTTGTTGTTGCTATGCAT |
| GenBank Accession | CR770360 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:11345898 - go to primer design |
| BLAST e Value | 1e-47 |
| Hit Clone Code (BAC ID) | T6K22 |
| Hit Gene Code | At4g21326 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | subtilase 3.12 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 255F07 |
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Last Updated on 10.06.2021 13:37 |
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