SimpleSearch - Line and FST details


Line specific information

 
Line ID 377D04
Vector Used pAC161
Line Availability available as T3 set from NASC (N436136)
Segregation Analysis 50:46:33
Confirmed for Hit At4g13340
Parent of DUPLO pair none
Parent of pair(s) 3569, 8282, 9729

Gene hit MPA24

 
Sequence (A. th genome BLAST matches underlined) 
>28-K017229-022-377-D04-8409
CTAAAGATGTAGAGGGAGAGAGTCACTCATCTATCTCCATTCAATTACCGAACCCAAGCT
ATGGGTCTCTCCCTTATAGTGAGANCNNCNTTCCCCTTACCGTACCTACTANTTCTTGNC
TCACAACACTTAAAAATTATTCATTCAATTTAAAAGGATATCACAATCTAACCAAAAATG
AACCTTTGTTTCTGTTTTATTACAAAACCACACAAAAAACTCTCTCATTCAATTCTCTCT
ATGGAATCCTCCNTATATCTGAGATGAAGTGGCTATGGGATCCTCCNTATAGTGAG
GenBank Accession FR809110 [GenBank]
Graphic View Graphic view of sequence FR809110 of line 377D04
Predicted Position of Insertion Chr5:26298173 - go to primer design
BLAST e Value 6e-46
Hit Clone Code (BAC ID) MPA24
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g13340

 
Sequence (A. th genome BLAST matches underlined) 
>28-K026788-022-377-D04-8409
TTCGGGAATGAAGCCTTTACAATTGAATATATCCTGTGGAGTTACGGACATTGGATCCGA
TCGCATTCGAAGTGAAATTGTTTGGATCAGAGAGAATCGCTTGTTTCCAAGCTTGTAGAG
CTATATAAGCATTTCGCAATCTCGGATTCTCGAAGTTTAGAGAAGGATCAACGGTGATTT
TGACGCTTCGTTCGGCGAATTCGAGTAATTGACGGCGTTGAATGTGACGGACTTCGTTAT
CGGAGAGAACGCCGCCGTCAGAGGAGATTGAGAGAGCGTTGGTGAGATTGATGAGGAAGA
AGAAGAAGAGGAGGATTTGAATCGTCTTCTTCATGTCAGTGTATGGGATCCTCCCTATAG
TGAGACGTATTACACCCTGCTTTTTNANGTTGAGGGCATGGGAGGGAGAACGAAAAATGG
CACCAGGGGTAGAGGAGAGTGTACAACGCTGGTAAATATTACGGGACCGGAGAACGAGCC
TGGGAGTGGAGGGATTATCCGAAGAGGGAAAGATGAGTGGAGAGGAGGGAGAGAAA
GenBank Accession CR396601 [GenBank]
Graphic View Graphic view of gene At4g13340
Predicted Position of Insertion Chr4:7758904 - go to primer design
BLAST e Value 3e-114
Hit Clone Code (BAC ID) T9E8
Hit Gene Code At4g13340 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat (LRR) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR396602 [GenBank] CR396602 [GenBank]


Last Updated on 10.06.2021 13:37