SimpleSearch - Line and FST details


Line specific information

 
Line ID 377E05
Vector Used pAC161
Line Availability available as T3 set from NASC (N436149)
Segregation Analysis 50:46:35
Confirmed for Hit At1g79610
Parent of DUPLO pair 2370
Parent of pair(s) none

Gene hit F20B17

 
Sequence (A. th genome BLAST matches underlined) 
>37-K017229-022-377-E05-8409
ATATTGCGTATACGCTATTTTTGTCGCAATACGCTATTTTTCCGTATACAATAACATTAG
AGGTTTATAAACATCACATGAACCACTATATTGACAATCATGACGCGCGACTTTTGTTTA
CAACTTTTTATTTGAGAGTATTGAAATAATGTTACCAGATAACTTTATTGAATCTTTAAC
TTCGACCCACACCTATAGGTCTTTTTAAGAAAATATGAATCTATTTATTTGGTTATAACA
ATTTCGAGTTGTGAAATACAACAAAGCAAAAACGTTTCTATTACTTTTGTTAAGAAAAAA
TTTCTATGGGATCTCCCCAATATGGTGAGGAGNANACAAGCGTGTCTGTGCTCCACTCAT
GTTGACGAACATTTTCTTCTTGTCATTGAAGTCATAAGAAAACTCTGGAATGAACTGGTT
CGCCAGTCCTTTACGGCCGATTTCTGTTAGGTCCCTCTATTTGAAATCTTTGACTCCCAT
GGGAATTGGGGATCCTCTA
GenBank Accession BX004117 [GenBank]
Graphic View Graphic view of sequence BX004117 of line 377E05
Predicted Position of Insertion Chr1:29949245 - go to primer design
BLAST e Value 5e-136
Hit Clone Code (BAC ID) F20B17
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g79610

 
Sequence (A. th genome BLAST matches underlined) 
>37-K017219-022-377-E05-8409
TGATCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATGAACGGCCGGGTACGTGT
TCATGAACCTTTTCCGTCAACAAACATTAGCCATTCACAGTAAAGAGATACTTACACAAG
CAATCCAGTAACCATGGAAGCTACAAAAGTTCCAAGCACTGAAAAAGTGACAATGGCTCC
AAAGTTTGAGAAGAAAGGTTTCTGCATAAAACCCAACAACAACGTAAGCATCATCAAGAA
CTTAAAAGCGAGGATGCGATCTTTGATGGTAAAACAAGAAAAGCAATAAAGACATGAGGG
TCTCTGCACTTACAGGTTGTAAACTGAAGCCTGACTGGGTGCAAACAAGTACGTCAAGGA
AAACAACATATTTTGTTGCCTATGGGA
GenBank Accession BX004116 [GenBank]
Graphic View Graphic view of gene At1g79610
Predicted Position of Insertion Chr1:29956081 - go to primer design
BLAST e Value 5e-179
Hit Clone Code (BAC ID) F20B17
Hit Gene Code At1g79610 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Na /H antiporter 6
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37