SimpleSearch - Line and FST details


Line specific information

 
Line ID 377H02
Vector Used pAC161
Line Availability available as T3 set from NASC (N436182)
Segregation Analysis 50:49:48
Confirmed for Hit At2g35585
Parent of DUPLO pair 311
Parent of pair(s) none

Gene hit At1g76870

 
Sequence (A. th genome BLAST matches underlined) 
>16-K017229-022-377-H02-8409
GAGACGAGATGATTTGGCTATTGCTCCAAGATGGGATGGATGAAGAATCTGATGTTTCTG
TGACGTCAATTCCATCGCGGGCTATGGGATCCTCCNCTATAGTGAGAANTGTCGACTGAT
GTCCTCTATCAATAAGTGAATATGATTCTCCATGTATGTGAATGACTGCTGGAAGATCGA
AACCAAAGAATTCTCTCCTTGGCACTTGTCGCATGAATGAATAAGATGGTGAAGCTAATG
ATAACTGCTCTTTCTTATATCGGTGAAGACTCTGGTTCTGATAAGAAATTTGCAGTTTTG
CAGAAGAAAGGTAAGTGGAGATCAGTTTCTACAGTCATGGATGAAAGAGGTTATCATGTT
TCGCCGCAGCAATGTGAAGATAAGTTTAATGATCTTAATAAGCGGTATAAGAAGCTTAAT
GAGATGCTTGGTAGAGGAACTTCTTGTGAGGTTGTTGAGAATCCTTCACTCTTGGATAAG
ATTGATTACTGGAATGAGAAAGAGAAAGATGAAGTTAGGAGAATCATGAGCTCTAAACAT
CTTTTCTATGAAGAGAATGGGTCTTATCATAACCGAAACAGAATGCATTTGCCTCCTGAC
CCTGCGGGACAGAAGATCTCTTCACTTGAATACGC
GenBank Accession BX004159 [GenBank]
Graphic View Graphic view of gene At1g76870
Predicted Position of Insertion Chr1:28857214 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F7O12
Hit Gene Code At1g76870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transcription factor
Insertion Classification 5' region
Confirmation Status unknown

Gene hit At2g35585

 
Sequence (A. th genome BLAST matches underlined) 
>16-K017219-022-377-H02-8409
TTTCATTTCTTGGAGGTTTTTCAAGAATTTTACATTGATAATGGATGGGTCTGGAAGTGG
ACATTGGATCGATTGATCGATGCTTTCTGGCTCCATCTGGGGATCCACCGGTTTAAACTC
TGGTGCTACTTCGATCCCTTGAGTTTCATTGGATGTGGTATTAATTGCCGGATCAAGATT
TTATCTTGGAGACAATACTTCCCTGCCATCCTGATCATAGGAGAAGATTTCATGTCAAGT
GTAGCCTGAAACCAATTTAGGGCTTTTCCAGATAAATTAAAAGGGTCTCAGATTCAACTA
TAGCTTGAAATCTATTAAAGGTAATCAGATTACAAAAGAACAGAGAGAATCTTGAACCAA
TGAAAGGAACTCAAAAGAACAGAAGAAGCACTAAACATCTCCCATTCTAATCATCAACTC
TTTGAGCCTATGGGAT
GenBank Accession BX004158 [GenBank]
Graphic View Graphic view of gene At2g35585
Predicted Position of Insertion Chr2:14937565 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T32F12
Hit Gene Code At2g35585 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cystic fibrosis transmembrane conductance regulator
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37