SimpleSearch - Line and FST details
Line specific information
| Line ID | 378A11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436203) |
| Segregation Analysis | 50:49:36 |
| Confirmed for Hit | At1g08930 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 10448, 96392, 96416, 96437, 96449, 96460, 96470, 96475, 96484, 96487, 96488, 96490, 96491 |
Gene hit At1g08930
| Sequence (A. th genome BLAST matches underlined) | >81-K027009-022-378-A11-8409 ACCATTTACAATTGAATATATCACAGGCTGGCTTTGTGTAGCATTGGCTCAGGTTTTTTG TCTAAACTACTTGTCGTTTGTCCTTTTGCTGACTTGTCACAATTTATTTATATTATCCTT TTATTAATTTCTGTGTTTTCTTAAAAAAATATTTTTATTTTAATATTTTGAAGAATGCAA TGTGGCTGGACTGTGGAAGATTGTTACTTGGAATCGGCGTTGGTATATTTAGCTACGTGG TAATTCCTCTTTTTCCAAATTCATTCTCATCACACAAATTTCCGTATGGGATCCTCCCTA TAGTGAGANNNANNNNNNNNNNNNNNNNNAAATTTTCCCCTATGGAAACGTACATATACT TAGGTTAAAAAAAGGCTCCGGAAATCTACGATTTTGAATTGATAAAAAATGGGAAAATAC TCTTTCTTTTTCTCCA |
| GenBank Accession | CR396653 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:2874355 - go to primer design |
| BLAST e Value | 2e-57 |
| Hit Clone Code (BAC ID) | F7G19 |
| Hit Gene Code | At1g08930 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Major facilitator superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR396652 [GenBank] CR396652 [GenBank] |
Gene hit F8K4
| Sequence (A. th genome BLAST matches underlined) | >81-K017230-022-378-A11-8409 TATCATGAGATTTCCTGGACATGAAGCCATTTACACTTGATATATTACTTACAATTGAAT ATAGATTTCTCATCTAAGCCCCCATTTGGACGTGAATGTTTTGAGTAATTGTAACAAATG TATTCCTGGATGTATTGTCGCATTGTCGTAATTATAGCATAACGCTATGGGATCCCCNCT ATAGTGAGANGCNCGNGTNANCTCTATGGGATCCTCCCTATAATGAGAAGAGACCATCTC AATCTCTGGGAACCTACGTAGAGAGGGAAGAACTCTATGGCCTCCTCACATTACAGAGGC TAAACGGGCATCACTAGGCGATGCTACATAAAGTGCGTAAACCAGGAACTCCACATACCT AACTGCTTTGTTGTGTACTGACAGTA |
| GenBank Accession | BX004184 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:22875007 - go to primer design |
| BLAST e Value | 4e-13 |
| Hit Clone Code (BAC ID) | F8K4 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit K18L3
| Sequence (A. th genome BLAST matches underlined) | >81-K017220-022-378-A11-8409 CACTTTAACACCTTAATGGGTAAAAGTCACTTTCACAAGATACCTTATGAAACGGCGGCA TGGTACCCATGATCTTATAAGCCATTTACTTTTTTTGTTTCTCTCATTCTTTTTTTGTGT GGTATATCCTATGGGATCCTCCCTATAGTGAGAGNNCNNNANNNTTANCCTATGGGATCC TCCCTATATCGACGAACNCATANTTTTCATAACTCANTATTAAACCTACAACCTATGGAT TAAATGAAAAAGTCATGATGATCCTTTTAAACCCTACTACTTAACTCATATAAGTTATAA ATAGTGGCGTTTTTCCTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | BX004183 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:15115442 - go to primer design |
| BLAST e Value | 1e-47 |
| Hit Clone Code (BAC ID) | K18L3 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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