SimpleSearch - Line and FST details


Line specific information

 
Line ID 378D01
Vector Used pAC161
Line Availability available as T3 set from NASC (N436229)
Segregation Analysis 50:49:37
Confirmed for Hit At5g46600
Parent of DUPLO pair none
Parent of pair(s) 93477, 93478
Note

Gene hit At5g46600

 
Sequence (A. th genome BLAST matches underlined) 
>04-K027039-022-378-D01-8409
AATTCCTGATAATCGGCTACGTCATCCTCGGAAGATTGAGACCCTTCTTTCTCTTCTTTC
TAGAATCTTCATCTTCCATGGAAATCTCCATGCTCCGTGCTTCGACCTTGTATGGGATCC
TCCCTATAGTGAGACCTATTGGTAATTACTCTTTCTTTTTCTCCATATTGACCATCATAC
TCATTGCTGATCCATGTAGATTTCCCGGACATGAGGCCTTTT
GenBank Accession CR396695 [GenBank]
Graphic View Graphic view of gene At5g46600
Predicted Position of Insertion Chr5:18910617 - go to primer design
BLAST e Value 2e-38
Hit Clone Code (BAC ID) F10E10
Hit Gene Code At5g46600 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation aluminum activated malate transporter family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR396692 [GenBank] CR396693 [GenBank] CR396694 [GenBank] CR396694 [GenBank]

Gene hit At1g20970

 
Sequence (A. th genome BLAST matches underlined) 
>04-K017220-022-378-D01-8409
AACAGATGATATAGTATCCTCCCCCGAGGAAGTTTCTGTACTTGATGCTTCTGAAGGGCT
TACTGTAGCGGCAGAGATAAAGAAAAGACCTTTTTACTTTCTGCCTATGGGATCCTCCCT
ATAGTGAGACCNTATGGAAGGGGTTGTCGCATTTCTTGTACCCTATGAAATCCTGCCAAT
AGGCGTGAAGACTGATATTACACACATCCAACATTGTCATATGTTTAGACAAGTCCTATC
TCTGAAATGCTCACCTTCCTATGGGAGCCTCTCTAGAATGGTCCCTATAGTGAGANATTA
CAANGAGCACTTCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX004216 [GenBank]
Graphic View Graphic view of gene At1g20970
Predicted Position of Insertion Chr1:7316582 - go to primer design
BLAST e Value 6e-37
Hit Clone Code (BAC ID) F9H16
Hit Gene Code At1g20970 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calponin-like domain protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 368D01


Last Updated on 10.06.2021 13:37