SimpleSearch - Line and FST details


Line specific information

 
Line ID 378E04
Vector Used pAC161
Line Availability available as T3 set from NASC (N436244)
Segregation Analysis 50:37:35
Confirmed for Hit At1g13080
Parent of DUPLO pair none
Parent of pair(s) 6420, 6425, 6426, 8873, 11049, 71054, 71140, 71180, 71216, 71257, 71298, 71379, 71417, 71418, 71419, 71420, 71421, 71422, 71424, 71425, 71427, 71428, 71429, 71430, 71431, 71433, 71434, 71437, 71438, 71439, 71441, 71442, 71443, 71444, 71445, 71446, 71447, 71448, 71449, 71451

Gene hit At1g13080

 
Sequence (A. th genome BLAST matches underlined) 
>29-K017220-022-378-E04-8409
TGATCTGTAATTTCTCGGACATGAAGCCATTTACATTGAATATATCCTGCACCAACATAT
ATTCAATTGAATTGCCGTAGGGAAGAAAGAATCAAGATATTGTCACCTTGATTTTGGATA
TGATCGATAAACAAGAAGATTCAGATTCTTTCAAACTCAACATGGATAATCTCAAGGCAA
TTGTCATGGTAAATTCTCAAATTTTGGTTTTCTTTATATCCTATGTTAACCTATATTGAT
TCAAAAATTTTGTATCATTATTATGTGGTATTTAGGATGTATTTCTCGCGGGGATAGATA
CAAGCGCGGTAACAATGATTTGGGCGATGACAGAACTTATTAGAAACCCTATGGGAT
GenBank Accession BX004237 [GenBank]
Graphic View Graphic view of gene At1g13080
Predicted Position of Insertion Chr1:4459979 - go to primer design
BLAST e Value 1e-152
Hit Clone Code (BAC ID) F3F19
Hit Gene Code At1g13080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cytochrome P450, family 71, subfamily B, polypeptide 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g06230

 
Sequence (A. th genome BLAST matches underlined) 
>29-K026789-022-378-E04-8409
TGATCCCTGGGCATGGAATCCTCCCTATACTGAGATTAATTGATTATTACACTATTATCT
ACCACCCTATGGATTTGGTAACTATCAAGTCTGCGTTAATGAAGAATTTGTATGGAATCC
TCCCTATAGTGAGACCTATTGCTCTTCCCCCTAAGCATGCCATCCCTGAAAACACCCTAC
ACCCCGGGCATCCGCCCAACACCCTCGCAGAGTATTTGAACGCACGTATGGGATCCTCCC
TATAGTAAGTCATCCTCCCTATAGTGAGTCCTATTACTCGCCACCATTGCGATAACGGAA
AGGCCATCGTTGTAAATGCCTCTGCCGACAGTGGGCCCAGAGATGGACCCCCACCCACGA
AGAGCATCATGAAAAAAGAGGAGGTTACAACCACGACTTCAGTTCTGCTGAATTGATATA
GAATCTCCAGGGGCGGAAAACAGGGAGAGCAT
GenBank Accession CR396723 [GenBank]
Graphic View Graphic view of gene At1g06230
Predicted Position of Insertion Chr1:1908931 - go to primer design
BLAST e Value 5e-24
Hit Clone Code (BAC ID) F9P14
Hit Gene Code At1g06230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation global transcription factor group E4
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37