SimpleSearch - Line and FST details
Line specific information
| Line ID | 378G11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436275) |
| Segregation Analysis | 50:49:35 |
| Confirmed for Hit | At2g41370 |
| Parent of DUPLO pair | 12404 |
| Parent of pair(s) | none |
| Note |
Gene hit At2g41370
| Sequence (A. th genome BLAST matches underlined) | >87-K017230-022-378-G11-8409 GATCTGTNATTTCCCGGACATGAAGCCATTTACAATTGAATATATACTCGAATGATTTCC TTCTCTTCCACGAAACCATGTTTACTGCTCTCTCGCCTTTTCCTGATCAACTTCTCACGA ACTACAATATGAAGAACCGGAGCAAAAACTTAGCCACCCTGAGTTTGATGATAATTACGT TATTGACATGGTCGGATATCGTAGTAGGACAAGAAGCACTGCTATGGGATCCTCCCCTAT AGTGAGGAACTATATGANAATATCTGTATTAGTCAATAGGGTGTGCTATGGGATCCTCCC TATAGTGAGAGGAGACCCCCCATATAGAGAGATTCNCGTTCTACACACATTAGGGGAGGC ACATGAAGCATAACACTCTAGTACAAGCAGAACAAGAACCATAAAGCGGATACTTTCAAT TCTGTATTCTTGAGATGCGCATGGAGGAAGAAGAGGGCAAGCCGAGGGAGACCGAGAGAA CCCCGGGTGACCAATGCGCGCTGCTCAACGTCCAAGTAACGAAGAGGCGGGGAGAGTATC AAAATTAAGATCACCCGCGGCTGA |
| GenBank Accession | BX004278 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17239295 - go to primer design |
| BLAST e Value | 8e-27 |
| Hit Clone Code (BAC ID) | F13H10 |
| Hit Gene Code | At2g41370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ankyrin repeat family protein / BTB/POZ domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g25500
| Sequence (A. th genome BLAST matches underlined) | >87-K017220-022-378-G11-8409 CGACAGCATGCAGCGGATAGCCGCTATCGACATCGGAGAGCACGCCGAACGCGGTTACTA TAGTATCTACTTATAGTGAGANNAANNACNTCTGTCGANCCGGATTATTGTCTTAGCCAC CCTGAGTTTGATGACAATTACATTATTAGACTGGTCGGATATCGTAGTACGACAAGAAGC ACCACTATGGGATCCTCCCTATAGTGAGAACATCATCGACTCAACGAAAGCAATGAATTT ATTTTCGTATAGAGATCTGCCCATGATTGAGAAGATCACTGCATTGAGCTATTGAGAACC ACAAACGATGATGCTCAATGTAATGACAACTGAGACTCTTTCTTAGCGATGCAACTGTTT TACTTGCCGTCCAAAGAAACTATGCTATCAACTGTGCAGAACACAGNACCTTTGAATCGC TGATTCCACGCGTGTCATGTGATATCGACTCGTCAGACTAATCCATGAACAATCTCAGAG TGGAACCATCGGGATCATGATGGATTGTGTCGCCCAATCTTGCACAGGTTTGTTTTATTT TGCCATATTATACCTA |
| GenBank Accession | BX004277 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:8880845 - go to primer design |
| BLAST e Value | 3e-82 |
| Hit Clone Code (BAC ID) | T14C9 |
| Hit Gene Code | At5g25500 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | exosome complex exonuclease |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At1g11572
| Sequence (A. th genome BLAST matches underlined) | >87-K017230-022-378-G11-8409 GATCTGTNATTTCCCGGACATGAAGCCATTTACAATTGAATATATACTCGAATGATTTCC TTCTCTTCCACGAAACCATGTTTACTGCTCTCTCGCCTTTTCCTGATCAACTTCTCACGA ACTACAATATGAAGAACCGGAGCAAAAACTTAGCCACCCTGAGTTTGATGATAATTACGT TATTGACATGGTCGGATATCGTAGTAGGACAAGAAGCACTGCTATGGGATCCTCCCCTAT AGTGAGGAACTATATGANAATATCTGTATTAGTCAATAGGGTGTGCTATGGGATCCTCCC TATAGTGAGAGGAGACCCCCCATATAGAGAGATTCNCGTTCTACACACATTAGGGGAGGC ACATGAAGCATAACACTCTAGTACAAGCAGAACAAGAACCATAAAGCGGATACTTTCAAT TCTGTATTCTTGAGATGCGCATGGAGGAAGAAGAGGGCAAGCCGAGGGAGACCGAGAGAA CCCCGGGTGACCAATGCGCGCTGCTCAACGTCCAAGTAACGAAGAGGCGGGGAGAGTATC AAAATTAAGATCACCCGCGGCTGA |
| GenBank Accession | BX004278 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3884384 - go to primer design |
| BLAST e Value | 4e-72 |
| Hit Clone Code (BAC ID) | T23J18 |
| Hit Gene Code | At1g11572 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Plant thionin family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 366G11 |
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Last Updated on 10.06.2021 13:37 |
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