SimpleSearch - Line and FST details


Line specific information

 
Line ID 378H10
Vector Used pAC161
Line Availability available as T3 set from NASC (N436286)
Segregation Analysis 50:43:35
Confirmed for Hit At5g11950
Parent of DUPLO pair none
Parent of pair(s) 4504, 4509, 4548, 4557, 96314, 96319, 96320

Gene hit At5g11950

 
Sequence (A. th genome BLAST matches underlined) 
>80-K026789-022-378-H10-8409
AGATAGATTTGGTTTATGGAGGAGGAAGTGTTGGATTTGTGCACTTCCATACTCTGGACC
CCAGGCACGCGATCCTCCCGATCTTCAGCCTCTGTATACT
GenBank Accession CR396809 [GenBank]
Graphic View Graphic view of gene At5g11950
Predicted Position of Insertion Chr5:3855543 - go to primer design
BLAST e Value 4e-12
Hit Clone Code (BAC ID) F14F18
Hit Gene Code At5g11950 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Putative lysine decarboxylase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR396809 [GenBank]

Gene hit At5g66595

 
Sequence (A. th genome BLAST matches underlined) 
>80-K017220-022-378-H10-8409
TGATCTGTAGATTTACAGGACATGAAGCCATTTACATCCGATATATCCTGATGGAAAACA
TAATATCTCTTTGTGCCTTTTTCACGAACATAATCATTATCTTTATTAAATATGATAGAA
GGGTAATACAGCAATATTCCTATGGGATCCTCCTCTATAGTGAGAGCGAAATCTTAATAG
TAATTGCCAATTTTTTTTCAATTCAAAAATGTATATGTCCCCCCCGATATTATAANCNCN
NCNCNGCANGACCTCCCTCAAGCACGAAAGTCACTACTCTCTTCCTTACCCACTCCTTGA
TAGTCGATCTGCACCCCTCTGCCTTAGCGCACGCTACCAACCCCTGTACTCCTCTCAAAA
CCCAGCCCATACCCAATTCCTTTCTCACCTCT
GenBank Accession FR809159 [GenBank]
Graphic View Graphic view of gene At5g66595
Predicted Position of Insertion Chr5:26583248 - go to primer design
BLAST e Value 4e-04
Hit Clone Code (BAC ID) K1F13
Hit Gene Code At5g66595 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37