SimpleSearch - Line and FST details
Line specific information
| Line ID | 379C05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436317) |
| Segregation Analysis | 50:46:46 |
| Confirmed for Hit | At2g21940 |
| Parent of DUPLO pair | 12755 |
| Parent of pair(s) | none |
Gene hit F18A8
| Sequence (A. th genome BLAST matches underlined) | >35-K017231-022-379-C05-8409 CTTTTATATCAACAATGGTATCTGACCCTCCCGAAAAGAGCAAGACTCANAGTGCTTGTT ATATATATTGGGATACGAAGAACACTGAAGGTCGAGATGACAAAATCAGTATATAGCAAG ATTCTATGGGATCTCCCTAATAGTGAG |
| GenBank Accession | BX004326 [GenBank] |
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| Predicted Position of Insertion | Chr2:11371948 - go to primer design |
| BLAST e Value | 9e-39 |
| Hit Clone Code (BAC ID) | F18A8 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At4g27480
| Sequence (A. th genome BLAST matches underlined) | >35-K017221-022-379-C05-8409 TTTAAAAACCGGGTATTTTTTTTACGTTCTTCGATTCCTAACAAATACGAACAGCGCAGA AAAAGGTTTCTTTATCCTTAGACGGCCCTAGGGAATCCTCCCTTATAGGGAGAANNATGN TNNCTTTGTGTACCGTCGTGATATAAGACGAGTGATATGGGCCGACGACATTGATGATTG CATTTCGAATCAACTGAAAATGGAGGAGAGTGGCCCATGGTATCCTCGCTATAGTGAGAG AAGATGATACGTGACGTGTATCACGCCAAGGCGATAGAGGGCACGACGAAAGTACGAATG GGTAGCCGACTATTAGATGACTCTCTGAATGGAGTGTGAGCTTCCTCATTATATGGAAGA CCTCGCTAAAGAGCAGAGATGTGAATCACTTCAGGCAGACCGAGGCCCTTGGAAAGTCTG GAGAGTGCGGATTATAGCGCCGCAGCCGGAGAAGAGAACGACACTCTGTTATGTCAAAAG GGGAATGCCCCACCGTTATAATAGCGCGGCCGCCCGCCCGGTGGGGCCCGCGGGGGCGCN CGCCCCCGGGGCGGCGGCGGCGCCATAGTGAACGATAGGAGCNCCGCAACCGGGCGCCCA GGACAGACGAGAGCGCCGTACATGGGAGCACGGCGACGAGGCGAGAGCGCCTCGGAGCCG CCGCGGAAACAAAACGCGAGAACGGACGGCAACGCGANAGCCGAGGCGAGACGAACCACC ACGAAGAA |
| GenBank Accession | FR809172 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:13738914 - go to primer design |
| BLAST e Value | 4e-16 |
| Hit Clone Code (BAC ID) | F27G19 |
| Hit Gene Code | At4g27480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At2g21940
| Sequence (A. th genome BLAST matches underlined) | >35-K026790-022-379-C05-8409 ATATATACATTGAATATATCCTGGCCGATTAGTGTGAATGTTCAGAGCATTGCATCTAAT CTCTATTGTTATGCGATAGCCATCCTAAAGATGACGAAATATTACTCCCCTGTAGCTTAC GCTCGACTTTTCTACGATCAACCCATGATGGATATGGAATCCTCCCTATCGTGAGACGTG ACTTGTCGATCAATGTAGCGGAACATGCGGGGGGGCGGACCGAAAAGCGAAAAAANCTGA CCCTCCGAGACANCAGCCAAGACACCGTAATAATGGGAAAAAATATCAACGCGTGTTTGA GATCCACTCTAAAGGCCAACCTAATGTTAGTGAAAGTGTGCATAGACCAACTAGTAGGGG AAACGACATTATAACAACCCTCATAAACAAGAACACTAACAATGAAAATGGACTCAAACC TNGGGGGGGTTTAAATTATTGGTTTTTTTTTTTTTAGTAATTGAGATATAGGAAGATTGA TGAGGAAAAAGAATAATAATGAGAGTATATATAGAATTAATAAAGAGTGAGAATGAAAGT TTG |
| GenBank Accession | FR809173 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:9351262 - go to primer design |
| BLAST e Value | 1e-05 |
| Hit Clone Code (BAC ID) | F7D8 |
| Hit Gene Code | At2g21940 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | shikimate kinase 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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