SimpleSearch - Line and FST details
Line specific information
Line ID | 379F02 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N436350) |
Segregation Analysis | 50:50:32 |
Confirmed for Hit | At5g05410 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g05410
Sequence (A. th genome BLAST matches underlined) | >16-K035333-022-379-F02C-8409 TGAGCCATTTACAATTGCATGTAGAACACAAATTGATACATCGAGGAAAAGGAAATCTAG AAGTAGAGGTGACGGTACTACTGTGGCTGAGAGATTAAAGAGATGGAAAGAGTATAACGA GACCGTAGAAGAAGTTTCTACCAAGAAGAGGAAAGTACCTGCGAAAGGGTCGAAGAAGGG TTGTATGAAAGGTAAAGGAGGACCAGAGAATAGCCGATGTAGTTTCAGAGGAGTTAGGCA AAGGATTTGGGGTAAATGGGTTGCTGAGATCAGAGAGCCTAATCGAGGTAGCAGGCTTTG GCTTGGTACTTTCCCTACTGCTCAAGAA |
GenBank Accession | HG968939 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:1602683 - go to primer design |
BLAST e Value | 7e-173 |
Hit Clone Code (BAC ID) | K18I23 |
Hit Gene Code | At5g05410 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | DRE-binding protein 2A |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | BX004366 [GenBank] |
Gene hit At5g29975
Sequence (A. th genome BLAST matches underlined) | >14-K017231-022-379-F02-8409 AAGAGAAAGAAGCCTATTTCGAGGAAAGAAGAATTGAGTATTCTGCAACTCATCTCTCAA GAGAGGATGCTGAATATGATGATGAGATTAGAGAGGACTATGCAGACCCTCTCTATCACC CATTTTCTTCTTAATGAGTGTGAGGAGTCAAGCTATGGGATCCTCCTTATAGTGAGANAG NCTCTTCCTTCGAGTTGATAAATCGCTTTCGAGTTTACCCTTCTTGCTCGTATCTTTTCT TCTTCTTCTTGCGCGTAGCTCTTTCGAGATTTCCTCTTCTTTTTATCAGACAGCTTTAGC AGAAATCAGAATATCTAAGGAAGACAAAGTATCTACGGAGTATTTATAGCCTTCTCTATG GGATCCTCCCTATACGGAGAGCNTTTCCGCAAGTCCTGTAAAGGCCTCTATGTACAACTT GTGAA |
GenBank Accession | BX004367 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:11327427 - go to primer design |
BLAST e Value | 2e-82 |
Hit Clone Code (BAC ID) | T3P01 |
Hit Gene Code | At5g29975 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | |
Insertion Classification | TS2TE |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |