SimpleSearch - Line and FST details


Line specific information

 
Line ID 379F03
Vector Used pAC161
Line Availability available as T3 set from NASC (N436351)
Segregation Analysis 50:49:38
Confirmed for Hit At2g19360
Parent of DUPLO pair none
Parent of pair(s) 5847, 11373, 84442, 84460, 84464, 84467, 84468

Gene hit At2g19360

 
Sequence (A. th genome BLAST matches underlined) 
>22-K026790-022-379-F03-8409
CCGGACAGAACCATTTTCAATTGAATATATCCTGACCCACCCGTGAGCAGACGACAGATT
AGGGACATCTACATATATTACCGAGCCTAGGGTAAGGTGAGGTCTGGAATACTGAATCCC
AGTAATATCCATCAACATAAACCGTCGTAATCCAACTAATAACGACGGTATGGGATCCTC
CCTATAGTGAGTCGTANTACCCCGGNNTTTNNGGGGGGGGGGGGGGANANANTTNNNAAA
TAAAAATATTTTATAATANNTTAAATNGTTGGTGTTTTTGAAGGAGAAAAAAAAAAACAG
GGAGTGGNACGAAGGCCAAAGAGGGAGAGATGGGATGAGTAGGAAAAGATGACGAACAGA
AGACTATTTTTAAATAGATTAACAACTATAAAATAGACGAATCGGTCGTAGTGCAAACTT
TAAGCAAATGAATGGTGGGAGAAGTACACTTATATTTTTAATTCGACAACAAGATAATAC
ATTCTCTATGAAAAATAAGTGGAATGA
GenBank Accession CR396840 [GenBank]
Graphic View Graphic view of gene At2g19360
Predicted Position of Insertion Chr2:8379335 - go to primer design
BLAST e Value 1e-08
Hit Clone Code (BAC ID) F27F23
Hit Gene Code At2g19360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation tRNA-splicing ligase, putative (DUF239)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g42920

 
Sequence (A. th genome BLAST matches underlined) 
>22-K017231-022-379-F03-8409
GAAGATATGACANGGANGCAAGGCTATTTATCCATTTCTGAAAAGGCGAAATGGCGTCAC
CGCGAGCGTCACGCGCATTCCGTTCTTGCTGTAAAGCGTTGTTTGGTACACTTTTGGCTA
TGGGATCTCCNCCTATAGTGAGATGGCACTTTTACACATCTTCCGTCGGATGGCGACGAA
ACTGGTATGAGAGTGGAGTCCAATCATAAGCTGGTTGCTA
GenBank Accession FR809183 [GenBank]
Graphic View Graphic view of gene At2g42920
Predicted Position of Insertion Chr2:17861889 - go to primer design
BLAST e Value 0.001
Hit Clone Code (BAC ID) F7D19
Hit Gene Code At2g42920 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pentatricopeptide repeat (PPR-like) superfamily protein
Insertion Classification TS2TE (3')
Confirmation Status unknown


Last Updated on 10.06.2021 13:37