SimpleSearch - Line and FST details


Line specific information

 
Line ID 379H09
Vector Used pAC161
Line Availability available as T3 set from NASC (N436381)
Segregation Analysis 50:50:39
Confirmed for Hit At5g58940
Parent of DUPLO pair none
Parent of pair(s) 7953
Note

Gene hit At1g34780

 
Sequence (A. th genome BLAST matches underlined) 
>72-K017221-022-379-H09-8409
TGTCCTGTAGATTTCCCNGACTGNAGCCATTTATACTTGTATATGTCATTTATGACCGAG
TTTCGATCTTATCTCTTCTCTCTATTCCTCCATTCCTCATTTTGCCATTAATGAATCATC
CATTAAGCCTATGCGATCCTCCCTATAGTGAGANNNNNNNNTNNNNNNCNNNTACCNTTN
TGNTTCGNTTTTTANNTTGAATAGGCCCTTCTTCAAATTTTACCTATGTGCCCGGTCTTC
TACCGCCTTCCTCCATTCCCATGAACCCAACAATTATTTGCCGTTTTCCCTTTCTATCTC
CCCCTCCCTAGATACCACCGCTCCTTGCTGCCAACTTTCCCTATCCTCCCCTCCCTTCCC
CCCGTGTCTTTTTTTTTCTCACCCTCTCTCCCCCACTTGTTTTCGCTTCTTTCCCTCCCT
CTCTTTCCCCCCTCCCCCCCCCCAGCCCTCGCCGCTCCCCCTTCCTATTTCCTGCGCCCC
GTTTCCTCTAACCTTTTCTTTGT
GenBank Accession BX004402 [GenBank]
Graphic View Graphic view of gene At1g34780
Predicted Position of Insertion Chr1:12749736 - go to primer design
BLAST e Value 3e-32
Hit Clone Code (BAC ID) F21H2
Hit Gene Code At1g34780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation APR-like 4
Insertion Classification CDSi
Confirmation Status failed

Gene hit At5g58940

 
Sequence (A. th genome BLAST matches underlined) 
>72-K017231-022-379-H09-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTNATACTAGCACTGATGGATATATGTCTTT
ATGGACATGATCCATCTTTTGAGTTATCGATAATGTCTTCTCCGAATAATTCTTAAGATA
CTACCTCAATCTGTTTTCCACATATTTTCCAAGAAAAGGATTTCAACTACTACCTTTCTC
GCACGCTTGATAGCAACAATAGTTCCATCATCAAGTTTTCCCTTAAAAACAGTTCCAAAA
CCGCCTTCCCCAATTTGATGAACCGAAGAAAAATTTGCGGTTGCCCTTTGAAGCTCCCCA
AAAGAAAATATTACCGGGCCTTGATGCCAACTTTTGCTATGGGA
GenBank Accession BX004403 [GenBank]
Graphic View Graphic view of gene At5g58940
Predicted Position of Insertion Chr5:23799535 - go to primer design
BLAST e Value 1e-139
Hit Clone Code (BAC ID) K19M22
Hit Gene Code At5g58940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calmodulin-binding receptor-like cytoplasmic kinase 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37