SimpleSearch - Line and FST details


Line specific information

 
Line ID 380B09
Vector Used pAC161
Line Availability available as T3 set from NASC (N436405)
Segregation Analysis 50:48:48
Confirmed for Hit At1g27000
Parent of DUPLO pair 2407
Parent of pair(s) none

Gene hit At3g41768

 
Sequence (A. th genome BLAST matches underlined) 
>66-K017222-022-380-B09-8409
GATCTGACATTTCCGGACATGAAGCCATTTACATCCGATTATGCCATTTACAATACGCTC
TCCACACTGGGTCCTGGAGGCTGTAAGACCCACTATTTTTCTATCTGCAGATACCACGAA
TGTTGAGAAATGACGGATTTTTAAGCCCATATCATCCTATGGGATCTCCACTATAGAGAG
ATACACTATGGGATCCTCCCTATAGTGAGACTCCCTATAGGGAGACAATCTACTTCCCTT
ATCGAGGATCCATTGGAAGGCAAGTCTGGAGCCTCCATACGCGAATATTCCTACTCCAAT
AACGAATATTTAAGCCGTTGGGGATCCTCCCTCTAATGAGAACCTTGGGATGGGTCGGCC
GGTCCGCCTTTGGTGTGCATTGGTCAGCTTGTCCCTTCGGTCGGCGATACGCTCCTGGTC
TTAATTGGCCGGGTCGTGCCTCCGGCGCTGTTACTGTGAAGAAATTAGAGTGCTCAAAGC
AAGCCTACGCTCTGGATACATTAGCATGGGATAACATCATAGGATTTCCATCCTATTGTG
GTGGCCCTTCGGGATCGGAGTAATGGATTACAGGGACCAGTCGGGGGGATTCGTATTTCA
TAGTCCACAAGGGAATTCTTTGAATTTATGAAAGAACAACAACTTGGGAAAGCATTTTGC
CCAGGATGGTTTTCCTTAATCAAGAACGAAA
GenBank Accession BX004433 [GenBank]
Graphic View Graphic view of gene At3g41768
Predicted Position of Insertion Chr3:14198033 - go to primer design
BLAST e Value 2e-123
Hit Clone Code (BAC ID) F21A14
Hit Gene Code At3g41768 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation rRNA
Insertion Classification TS2TE
Confirmation Status unknown
Other FSTs Supporting this Hit BX004434 [GenBank]

Gene hit At1g27000

 
Sequence (A. th genome BLAST matches underlined) 
>66-K017232-022-380-B09-8409
GACACGAACCGGATTCTCACTTCATATCCTTACCAGATAGCTCAAACTATGGGATCTTCC
CTATATCGTAGTATGCATTTTTTTTTATAAACGTGCTATGGGTCCTTCCTATATGGAGAC
CTTCCATAAGTCGGGGTTTGTTGCACGTATTAGCTCTATGGGATCCTCCCTATAGTGAGT
AGAANAANCANNGNTACTCTGCNACTATCTTGATGAACAATGAAGAATAGTCCGACTTGT
TGAGTGTATTGCAGGTACTTTTTTGATTCTATGCATTTTTTTTTTGGTTCCCCCCCTGGA
TTTTTTAATTTTGGCAAAATTTTTT
GenBank Accession BX004434 [GenBank]
Graphic View Graphic view of gene At1g27000
Predicted Position of Insertion Chr1:9374048 - go to primer design
BLAST e Value 2e-09
Hit Clone Code (BAC ID) T7N9
Hit Gene Code At1g27000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GRIP/coiled-coil protein, putative (DUF1664)
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37