SimpleSearch - Line and FST details


Line specific information

 
Line ID 380B12
Vector Used pAC161
Line Availability available as T3 set from NASC (N436408)
Segregation Analysis 50:48:37
Confirmed for Hit At4g14305
Parent of DUPLO pair none
Parent of pair(s) 12532
Note

Gene hit At1g23560

 
Sequence (A. th genome BLAST matches underlined) 
>90-K017222-022-380-B12-8409
ATCAACTTTGCTCTTTTCGGTTACAACATCGACTCTCTCCTTGATCATCGATATCGCACT
CCTCCTTTTCCTCCCCGAAACCTATGGGATCCTCCCTATAGGGAGACCCCATAGCGAG
GenBank Accession BX004438 [GenBank]
Graphic View Graphic view of gene At1g23560
Predicted Position of Insertion Chr1:8352699 - go to primer design
BLAST e Value 1e-10
Hit Clone Code (BAC ID) F28C11
Hit Gene Code At1g23560 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation OBP32pep, putative (DUF220)
Insertion Classification TS2TE (3')
Confirmation Status failed

Gene hit At4g14305

 
Sequence (A. th genome BLAST matches underlined) 
>90-K017232-022-380-B12-8409
ATATATTGATCATTCGAGTAGACTAAGGTATATCACATTGCAATTCGAATTTGCTACACG
GAAACGAACAGAATATAAGTGAAACAAGATGTTGTAATCTATGGGATCCTCGCCTATAGT
GAGACTAGACTATGGAATCCTCCCTATATTGAGAGAGAGATCCTCCCTATAGTGAGACCG
CAAGATCCCTTGACTCGACAGGGATCTTCATGGAAGCCTCCCCATAGATAGCAATGATGG
CATTTGTAGGAGCCACCTTCCTTTTCCACTATCGACACAACAAAGTGACTGATAACTGGG
CAATGTAATCCGAGGAGGTCTCCGGATATTACCCTTTGATGAAGAGTCTCAATTGCCCTC
TGGTCTTCAGAGACTGTATCTTTGATATTTTTGGAGAAGACGACTGTGTCGTGTTCCACC
ATGATGACGAGGATTTTCTTCTCGACATTGAGCCGAAAGAGACTCTGCATGAACTGATCG
CCAATACTTCTCGGGGAAGTCTGTTACGCACTCTATTTGAAACATTTGACTCCATGGGAA
TTGGGG
GenBank Accession FR809204 [GenBank]
Graphic View Graphic view of gene At4g14305
Predicted Position of Insertion Chr4:8235946 - go to primer design
BLAST e Value 2e-09
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g14305 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37