SimpleSearch - Line and FST details


Line specific information

 
Line ID 380E11
Vector Used pAC161
Line Availability available as T3 set from NASC (N436443)
Segregation Analysis 66:63:57
Confirmed for Hit At5g42570
Parent of DUPLO pair none
Parent of pair(s) 2548, 96907, 96909

Gene hit At5g28624

 
Sequence (A. th genome BLAST matches underlined) 
>85-K017232-022-380-E11-8409
TGATCTGTAGATTCCNGGACATGAAGCCATTNAAACCTGCATCTCTGTAGAATCAGTATT
CTTCCATAACCATCGCTATCACTTTCGAGTAACCAAAACTCTCCTTACTTTATAGTCTAG
AGTACTATGAAGTGCATCCTCCATTGCTATGGGATCCTCCCTATAGTCGAGACACTGCTA
TGGGATCCTCCCTATAGTGAGA
GenBank Accession BX004487 [GenBank]
Graphic View Graphic view of gene At5g28624
Predicted Position of Insertion Chr5:10626435 - go to primer design
BLAST e Value 8e-24
Hit Clone Code (BAC ID) F4I4
Hit Gene Code At5g28624 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At5g42570

 
Sequence (A. th genome BLAST matches underlined) 
>85-K017222-022-380-E11-8409
TGATCTGTAGATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGATTTTAGAGA
AACATCACAATGCTTGCAAATGCAAATCAAATTCATATCAGATCTTATGATCAAGGATTT
AAGAGATCGAGGATTTTGTGATTTATACCCGTAAGAGAAGCTTCGAGAAGATGCTTAGAC
GCAAGGACTTGATCAGTGGGATTAAGAACAGCACCATCTTCAGATCGGCGTTGGATATTA
ACCAAACTGTAGATACTCGACAAGAGAACGACGAATACGGTGGTTCCTATGGTTTTGACG
ACGACGGGACCACGGCCACGTTTGATTCGATCGAAGGTGAGGATGATTAGCTTTCGGAGA
GGAGTTTTGAAGAGGAGGAGAAGGATCAGTGCCATTTCGGCGAAGATCACTGTGTAAAGG
AGGTGGATCATTGTTCGTCGCCGGTGAGAGTAAACCCTATGGGAT
GenBank Accession BX004486 [GenBank]
Graphic View Graphic view of gene At5g42570
Predicted Position of Insertion Chr5:17022114 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K16E1
Hit Gene Code At5g42570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation B-cell receptor-associated 31-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37