SimpleSearch - Line and FST details
Line specific information
| Line ID | 381C02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436506) |
| Segregation Analysis | 50:47:40 |
| Confirmed for Hit | At3g52950 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2202, 80801, 80804, 80807 |
Gene hit At4g23200
| Sequence (A. th genome BLAST matches underlined) | >11-K026825-022-381-C02-8409 GAAGCCATTTACATTGAATATATCCTGAGCTTGTAACTTGTAAGAATATACTCAATTTTT AATTCTTTACGCGTATGGGATCCTCCCTATAGTGAGACATATGTCCCCACCCTGTATGAA AACTACCTTTCAGCGACTCACAAATCTTACATAACTATGGATCATCACATTTCATTTTCA AGTGAAATAATACCTCACATGTGGAATCTGCGTTGTTTTCAGTAACAATTCCAATTTGTC AATTGCAACAGCAACTTCCACGAGGATCTAGATTTGTAATGGTTACCTCATTTTTAGTCT GACAAGTATGGGATCCTCCCTATAGTGAGACNNANTANTC |
| GenBank Accession | CR396873 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:12145152 - go to primer design |
| BLAST e Value | 6e-88 |
| Hit Clone Code (BAC ID) | F21P8 |
| Hit Gene Code | At4g23200 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cysteine-rich RLK (RECEPTOR-like protein kinase) 12 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR396873 [GenBank] |
Gene hit At3g52950
| Sequence (A. th genome BLAST matches underlined) | >41-K107114-0022-381-C02C-3144 ACTATCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGACAGGG TACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGATTGTCGTTTCC CGGTCACCTGATGATGCATCATTCAGATATAGGGAAGCTCAGTTCTTACCCATCTCTAGG ACTAGGGAATTCGTTTTCGTTCAAATTTGAAGACCTTAAGGGCCGTGTACATCGGTTTAC TTCTGGAGCTGAAAACCTCGAAGAGCTGATGGGTATTGTGATGCAAAGAATTGGCAGCGA CAATAACAATGTGGAACAACGGCCTCAGATTATATATGAGGACGATGAAGGTGATAAGGT TTTGATTACATCGGATAGCGATTTGGTTGGTGCTGTTACTCTTGCTAGGTCTACAGGACA AAAGGTTTTGAGGCTGCATCTGGACTTCACTGAGTCAACAAGGAGCTTGAGCTCAGAAAC CACCCAACTCAAGAAAGGTGATTCTCGAGACAGAGGAAGCGGATGGGTTTCATGGCGTGG TGGTGTGGTGGTTACAGGA |
| GenBank Accession | HG968941 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19636051 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F8J2 |
| Hit Gene Code | At3g52950 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX004576 [GenBank] |
Gene hit T7B11
| Sequence (A. th genome BLAST matches underlined) | >11-K026791-022-381-C02-8409 ATGAAGCCTTTACAATTGAATATATCCTGAGCTTGCAGCTTGTAAGAATATAGTCGATTT TGAATTCTTTAGGTGTATGGGATCCGCCCTATAGTGAGACATAATTTCCATTGCGAATTG AGCCATGTGCACCTTCCCCCCAACACGGTGAGCGACGGGGCAACGGACTGATCCACATGG GACTTTTAAACATCATCCGTCGGATGGCGTTGCGAGAGAAGCAGTCGATCCGTGAGATCA GCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAACGCAGGTATGGGAT CCTCCCTATAGTGAGACGTATTACTCAC |
| GenBank Accession | FR809228 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:834896 - go to primer design |
| BLAST e Value | 1e-08 |
| Hit Clone Code (BAC ID) | T7B11 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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