SimpleSearch - Line and FST details


Line specific information

 
Line ID 381G10
Vector Used pAC161
Line Availability available as T3 set from NASC (N436562)
Segregation Analysis 50:48:41
Confirmed for Hit At2g23300
Parent of DUPLO pair none
Parent of pair(s) 3102, 3236

Gene hit At1g08775

 
Sequence (A. th genome BLAST matches underlined) 
>79-K017264-022-381-G10-8409
TGATCTGTAGAGTCACGGACATGAAGCCATTTACATGCGATATGTGATAAGAGTCAGGAG
TATAGGTGCGCACATAAGCGGATGTCTTAACTAATTAGTGATAAGACTTGACTGTAACTA
ATAACTTTAAAGTGGGTTCAATCCACAATGTTCACATAATTTACATAAAATTTCAAAATT
GAACATTTATAAAAAAAAACTTATAGTTTAATAGTAGTAATATAAAAATATAATTTTAAA
AGTATTTTTAAGCAAAAAAAAGATAGGAGTTAAAAATTTAAATTATGTGCAAAACATATT
GAACCTATGGGATCCTCCCCTTATAGTGAG
GenBank Accession BX004642 [GenBank]
Graphic View Graphic view of gene At1g08775
Predicted Position of Insertion Chr1:255859 - go to primer design
BLAST e Value 4e-47
Hit Clone Code (BAC ID) T1N6
Hit Gene Code At1g08775 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation novel transcribed region
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At2g23300

 
Sequence (A. th genome BLAST matches underlined) 
>79-K026825-022-381-G10-8409
GATGCTAGCGTGCGACTTGATCTGATGCTCGCGTGTGCCTTTATCATAAAGCGAGGAAAA
AGATTGAAATGTGAAAGAGATGATTTTGACTCACTGTAACGGGCGTTGACGAGACTGCCG
TTAGGAACAAAATCGTAAATGACCAATTTCTCGTCGGTGCCCCAATAGAATCCACGAAGA
CGTATGGGATCCTCCCTATAGTGAGACCTATTGCTCCTCCCTATAGAGGGTCCCCCTTAT
TGAC
GenBank Accession CR396897 [GenBank]
Graphic View Graphic view of gene At2g23300
Predicted Position of Insertion Chr2:9916355 - go to primer design
BLAST e Value 3e-90
Hit Clone Code (BAC ID) T20D16
Hit Gene Code At2g23300 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37