SimpleSearch - Line and FST details


Line specific information

 
Line ID 383G01
Vector Used pAC161
Line Availability available as T3 set from NASC (N436745)
Segregation Analysis 50:50:39
Confirmed for Hit At5g66070
Parent of DUPLO pair none
Parent of pair(s) 69694

Gene hit At4g33880

 
Sequence (A. th genome BLAST matches underlined) 
>07-K017266-022-383-G01-8409
TTGATAATGATGTTTCAATTTCATACGTTTGTTACTATCGGATCNTGCGTATACGTCGAG
AACCTATGGGATCCTCCCTATAGTGAGAAATATGTTTATCCGATCGTCCTGTTGTATGAG
CATGCCAACCACGGGGATCCCCTCTGCAGTGCTTGACATTCCGTGTCATAAAGACTTATG
TTCAACCGCCCAAACGTCGGAAAGCCTGACGACGGAGCAGCATTCCAAAAAGATCCCTTG
GCTCTTCTGGGTCGACTATGGGATCCTCCCTATAGTGAGAATGTAAAAACCACCAAAGAG
TGGCCTATGGGATCCTCCCATTAGAGAGAGGCCGACCAACGGACGCCGAGTTGACAGACT
GCCTATGGGAACCTCTCTATAATGAGAATACAAATTAAACAATGAAGAGGTCCGACCAAC
GAATGAAAAAAAGTCTGACAAAAGAGGTAATAATTGAAAATGTGCATGGTGCTAATTATA
CCTTTACAAAATAACTTCCATTTAAGAGATGTGAATGTACATCATTTTGGTTGAAATGGG
TGAAATATTTAATAATTAGGCGGAA
GenBank Accession FR809274 [GenBank]
Graphic View Graphic view of gene At4g33880
Predicted Position of Insertion Chr4:16239540 - go to primer design
BLAST e Value 9e-39
Hit Clone Code (BAC ID) F17I5
Hit Gene Code At4g33880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ROOT HAIR DEFECTIVE 6-LIKE 2
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At5g66070

 
Sequence (A. th genome BLAST matches underlined) 
>07-K017270-022-383-G01-8409
TTCAGCCACCCAAAACAACGAAAAGCCTGACGACGGATCAGCATTCCACAAAGATCCCTT
GTCTCTTCTGCGTTCAGGGTATGGCATCCACCCTTAAGGGTGAGATATGTAAAACCCACC
AAAGAGGGGGCTATGGGATCTCCCCCAATATGAGAGACCCTCTTCTCCATCAAAGTCTCT
CANTCCTTCCCTCCTCCTTTGGCAATCCGATGAGTCTGGAATTGGATGCCTTCTCTACTT
GGTAACAATCTTCATCATCATCACCACCAGATTTTCTTTTATTTTCTTATGCTCAAATGC
TTTTCCTATCTTATCTTTATATATATAGATTGATGTCATTGCTATGGGA
GenBank Accession BX285557 [GenBank]
Graphic View Graphic view of gene At5g66070
Predicted Position of Insertion Chr5:26421945 - go to primer design
BLAST e Value 6e-86
Hit Clone Code (BAC ID) K2A18
Hit Gene Code At5g66070 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37