SimpleSearch - Line and FST details


Line specific information

 
Line ID 383H09
Vector Used pAC161
Line Availability available as T3 set from NASC (N436765)
Segregation Analysis 50:48:44
Confirmed for Hit At4g18290
Parent of DUPLO pair 2631
Parent of pair(s) none

Gene hit At3g08290

 
Sequence (A. th genome BLAST matches underlined) 
>72-K017270-022-383-H09-8409
TGATCTGANATTTCCCGGACATGAAGCCTTNATACTAAGATATCATCCGTTAGTAGATGA
AGTGTCTCACACACTTCAATTGATTGAACTACTAATGATGTATATTCCTAGCTGTAGATA
CATTACATCAATCTTACTTTCCTCTATATCTGAAGAATGCAATAGAATTTCTATGGGATA
CTCCCCTATAGGGAGATGTGACATTTGCCCGTTTTCCTAATGCTCCTTTTGCATGTGCCC
AAACATGCCCAATCATGTTCTTAGCTTCTTATAAGTCCAATTCAACATTTATCCCTTTTA
TTTGGCATCTCTCTCTGTGCCATGAGTTAGACATGTAACTATGTAACAACGCGATTAAAG
AGATCAGAGCGGACTTATTGAAAAGAAATCTTGATTAGTTATTTACTTAGGAATCTATGG
GATCTCCCNAATTAGTGAGAACTTANNAGAANAATTTCNATCTCAAAGTCACCGGATAAC
TCGATTTCTCGACTCTCCGGCAAACCGTTAAACCGAGATGCGGGAATCCGGATTTGATCA
ACGGGGTTTCGGAGATGAACGGGGGTAAGATACTCCGTACGACTGAAAAATACTCGTTTT
TTCCCGGGAAACCACGGCGGGCGAAACGGGAAACCAGATCTGACTTATGCGTTTGCGCC
GenBank Accession BX285589 [GenBank]
Graphic View Graphic view of gene At3g08290
Predicted Position of Insertion Chr3:19545968 - go to primer design
BLAST e Value 3e-122
Hit Clone Code (BAC ID) F3C22
Hit Gene Code At3g08290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation long noncoding RNA
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At4g18290

 
Sequence (A. th genome BLAST matches underlined) 
>72-K017266-022-383-H09-8409
TAGTTATATTAGAGAGACTTTTCTGACTAAATAATAAACTGTGGGCACAATACAGTATTG
TTAATAAGACTCTTGAGTTTTTCAGCTATAGGCTACACAAGATTCTTAGTAGAGAAGAAG
AACTATGGGATCCTCCCTATAGTGAGAGTAGTATCGGAGATATTTCTGTTGTCCTAACTG
CGACAGGTGGAGGTGTATAGCATGACCCACTCATCTCTCCAACTGCATCGCCAACCACCG
CCTTGTCTTGAACCTACATGAGTGTGAGGATTACAGTCCTTTCTCTTTTTTCAGCTAAGA
GTTCCACCGCGAAGTTCTTTTGGAGATCTGTCTTGTTCACATACCTGATCGTCTTCGCCA
ACGCAGACGGTACTATCCTGCACAATCACCACATGAGCGAGTAAAACATGTTAGAAGGTA
ACTTCAACATTCCTATACAATTATTTATTTTAAATTTCATTCACTCACCACTGACCCTGA
GACTA
GenBank Accession BX285588 [GenBank]
Graphic View Graphic view of gene At4g18290
Predicted Position of Insertion Chr4:10117726 - go to primer design
BLAST e Value 1e-124
Hit Clone Code (BAC ID) T9A21
Hit Gene Code At4g18290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation potassium channel KAT1-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37