SimpleSearch - Line and FST details


Line specific information

 
Line ID 384F02
Vector Used pAC161
Line Availability available as T3 set from NASC (N436830)
Segregation Analysis 50:50:36
Confirmed for Hit At5g25060
Parent of DUPLO pair none
Parent of pair(s) 12723
Note

Gene hit At4g34960

 
Sequence (A. th genome BLAST matches underlined) 
>14-K017271-022-384-F02-8409
CTATTCGTTTTCTTGTTTATTGCTATGGGATCCTCCCTATAGTGAGAATGGCTAATACAG
AACCGGATTCTAATGGCTCGCAGTTCTTTATCACTACTGTTAAGGCTATGGGATCCTCCC
TATAGTGAGATGNCNNTGANACTTGTTTCTATGGGATCCTCCCTATAGTGAGAGCNACCT
CNNNACGANTTCCTCATTATTTTTTTTATCCACTAGGAACAATTCCCCGAAAGTCTTGAT
ATTATTTTTCTCGCCTCCTCCGCCTGCTGTCTGCGAATAAGATCGAAAGCCCCATCGATT
GATCCGTCAAACCAATCTCCGATGAACATGTGTCTCAAACTTCTACACCAGAATAGCGGC
GAAGCGTTTGAAAATTGCAACTCACCTCCTTCCTA
GenBank Accession BX285669 [GenBank]
Graphic View Graphic view of gene At4g34960
Predicted Position of Insertion Chr4:16650034 - go to primer design
BLAST e Value 2e-24
Hit Clone Code (BAC ID) F11I11
Hit Gene Code At4g34960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 365G08

Gene hit At5g25060

 
Sequence (A. th genome BLAST matches underlined) 
>14-K017267-022-384-F02-8409
TGATCTGAAATTTCCCGGACTGAAGCATTTACATTGAATATATCCCTTCTTTGAAACCGA
ACCCCCATCTTTGGACTTTTCACCTGCCATCCGCGAACGCATAGAAAAAAGGTCCATACA
CTTATTAATGCGTTCCCAATATAATCAAAGCATTGCTCTAACCATTTGACACCAATCAAA
AAGAACAAAGTACACACAAAGAGAGAAGCAATTGTAAACAAACAGTTAAAAAGCTGTGTA
GCCTTTGCAAAGACTAACCTTCAGAATCAACCTTAGGCTTGTCACCAGGATTTATCGTCC
CACCTCGAACAAAAGTCTTAGTAGTTGCATTATCCCCTTGAAACGATTCCACGAATTCTT
GATACAAACGAGCCGTTTCATCCTCTGCTTTCTGCGATTAAGATCGAAAACCCCATCGAT
TAATCAATCAAATCAATCTCCGATGAACAAATTTCTCAAATTCTACCCAGGAATAGCGAT
GAATCGATTGAAAATTTCAACTCACCTTCTTCCTATGG
GenBank Accession BX285668 [GenBank]
Graphic View Graphic view of gene At5g25060
Predicted Position of Insertion Chr5:8639448 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T11H3
Hit Gene Code At5g25060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA recognition motif (RRM)-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37