SimpleSearch - Line and FST details


Line specific information

 
Line ID 384G11
Vector Used pAC161
Line Availability available as T3 set from NASC (N436851)
Segregation Analysis 50:49:29
Confirmed for Hit At4g38000
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At4g38000

 
Sequence (A. th genome BLAST matches underlined) 
>87-K017271-022-384-G11-8409
ATTTCCCGGACTGAAGCATTTATCACACCAACAAACGGGACGTCATCGGCGTTTTCCGAG
CTTGTAAGAAACATCCATCGACGGCAATGATGATGATGAGTTCTGGTGGATTCTCCGGCT
ATATGTTTCCGATGGATCCTAACTTCAGCCTTGCCTCGTCTTCTATCGAGTCTTTGAGTT
CTTTTAACCAAGATTGGCACCAGAAGCTGCAGCAACAAAGACTCCGTCACTTCCATGTTT
CTCCAAGATTCTCTTCCGGTTAACGAGAAAACGGTTATGTTTCAGAACGTAGAGTTGATT
CCTCCTTCGACGGTGACGACGGATTGGGTTTTCGATAGGTTCGCCACTGGAGGAGGTGCA
ACAAGTGGCAATCATGAAGATAATGATGATGGGGAGGGTAATTTGGGAAATTGGTTCCAT
AATGCTAATAATAATGCTCTGCTCTAATTATCAATTATCATTTACTCTCTATTTCTCTAA
ATATTGTAGCTATG
GenBank Accession BX285703 [GenBank]
Graphic View Graphic view of gene At4g38000
Predicted Position of Insertion Chr4:17858763 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F20D10
Hit Gene Code At4g38000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DNA binding with one finger 4.7
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g20880

 
Sequence (A. th genome BLAST matches underlined) 
>87-K017267-022-384-G11-8409
GTCACTTACGACAGCAGCAGCGGATAGCCGCTATCGACATCGGAGAGCACGCCGAACGCG
GTTACCTATGGGATCCTGCTTATAGTGAGAGNAACTANNATGTGTAAAACCGGAGTTCTA
ATTTTCCACCCTGAGTTTGATGATAATTAATGTATTAGACTGGTCCGTAATCTTAGGATG
AAACAAAGCTCTACTCTGTGATACCCCCTATATCGAGAGTATCACCATATTGATCGAAAT
GCCGACGAAGAGTCTCGCTTTGAGTCTCCCAGGCAAGGCCACCAACAAAGACTTTAGTAA
AGGTTGTGTCACCAAAAGGAGAATTCAAGTAATGAAACCCAGAGCTCGGAATCGAATGAT
ACGCCATGGATTAGAACCAAAGACGGAAACTTTGATGAAGTATGGATAGAGACAGATCCT
AAGACTTGACCCGGTAAACCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX285702 [GenBank]
Graphic View Graphic view of gene At1g20880
Predicted Position of Insertion Chr1:7264502 - go to primer design
BLAST e Value 2e-123
Hit Clone Code (BAC ID) F9H16
Hit Gene Code At1g20880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA-binding (RRM/RBD/RNP motifs) family protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 643A05


Last Updated on 10.06.2021 13:37