SimpleSearch - Line and FST details


Line specific information

 
Line ID 386D01
Vector Used pAC161
Line Availability available as T3 set from NASC (N436997)
Segregation Analysis 50:38:36
Confirmed for Hit At1g35230
Parent of DUPLO pair none
Parent of pair(s) 335

Gene hit F5D14

 
Sequence (A. th genome BLAST matches underlined) 
>04-K018249w-022-386-D01-8409
CTCTTCTCGCACGGCTCTGTTACATCTCAATGCGTTAATGAACAGTCATTTACTTTCTCG
AATGATAGGTTTATTGGTTCACCAAGCACGGAACCGGTAGTTTTAGGTCAAATTTCCCAA
TCTGGTACGTTCAACCAATTGCATACGGCTGTCACACTATTTTGTTTAGGATAAACTAAT
TATCCTCTCACATCATAAGAGTTTACTTTTACTAATAGAGGATACAATTAATATAGTTAC
TAGAAGCCAAACAATCCAAGACATCACCAATATGTGGGTCGAGTAAATTAATGGTAAAGC
TAAAAAAACAACAACNATACTCAAATAGAGACTTTTGGATAAAGATGAACTCACAATTCA
TCCAAATTAAAATAGCATACAAAACAAGTGAAATCGATAAAAAAAAAAACAACGCCTTTA
CCTGGGAAGCCCAATGGA
GenBank Accession BX285883 [GenBank]
Graphic View Graphic view of sequence BX285883 of line 386D01
Predicted Position of Insertion Chr1:11728328 - go to primer design
BLAST e Value 6e-154
Hit Clone Code (BAC ID) F5D14
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g35230

 
Sequence (A. th genome BLAST matches underlined) 
>04-K018253-022-386-D01-8409
TGATCTGANATTTCCCGGACATGAAGCCATTTCATTGGTGTGGATCCTTCGGTCTCCTCT
ATTGCGCGCTGGGTAATTCAGAGAGACAATAGGTGTCTAGCACTCACCACCAATGAATTG
ATCATGCGCGAACCACGGAAACTACGCTGAGACAAATAGATCCCTCGGGATCAACTGGAC
CTGCTATAGGCATCCCTCCCATATGGCTGAGCAAACGCAGCTGCAGTTAGCAGAGTCTCC
CTCGTCGGAACTTTCGCCGGAGTGGCCGTGATCGCCGCTTTGTTGCTGTAGAGGCTATTG
ACCCATCGAATAGATTCGCTATGGGATCCTCCCTATAGTGAGANANNNGGANNTGANCAC
NAACACTTCTGAATGCGAGCCTAAATCCGCAATTGCGCGAACGATGTATCATATGGAATA
TCTTCGGGATTCATCGACAGACTTCCAGGGGTGGGAAGAGATNGGCCCACACGGTAAAGC
ACTCTCCCCTATACCAGTATCCTCTGATTGGACGTGACCTCGCTCTTTGGAATTGGAGAG
GCTTAGAAAACAACATGCAGATTCGGTTTCCCATTTTCCCCAACCCCGAGAGGGTTGAAA
ATATAGCAATGAAGGGCCTGTATTAACCGGAAGGCTAACCATTAGGGCAGGAAGATATTC
ATCCGCAAAAAGCAACAAGGGACGGCGGGAGAATTGGGTGGGCGAAACGGGGGGGGGGGG
GGTTATGGGGAGACGCGATATCACAAGTAACACATTTTTTTTCCATAAAAACGGGGAGGG
GGGGGGGGGCCCGTGTCATAAAAAAGAGAAGAG
GenBank Accession BX285884 [GenBank]
Graphic View Graphic view of gene At1g35230
Predicted Position of Insertion Chr1:12917353 - go to primer design
BLAST e Value 4e-53
Hit Clone Code (BAC ID) T9I1
Hit Gene Code At1g35230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation arabinogalactan protein 5
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37